Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021265X
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 212 MSWIEFKIGHP 180
           MS I+FK+GHP
Sbjct: 570 MSAIQFKLGHP 580


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 KTILRGGSYDFSAYRSYQKRHHRMTNFK 197
           KTI    +Y+ + Y +Y   ++   N+K
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYNNYK 115


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 114 KTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAP 224
           KTI    +Y+ + Y +Y+K ++ +   +  P     P
Sbjct: 88  KTIHNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPVP 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 456 SQPG*TGSMAVSVGSTLLMSTL 391
           ++PG TG+   S G+ LL   L
Sbjct: 174 AEPGSTGTTTTSTGTRLLHGIL 195


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 212 MSWIEFKIGHPVMSFLVA 159
           +SW+ F I H   S  VA
Sbjct: 258 LSWVSFWINHEATSARVA 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,784
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)