Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021265X
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapien... 30 0.95
At4g26030.1 68417.m03748 hypothetical protein 28 2.9
At2g35240.1 68415.m04323 plastid developmental protein DAG, puta... 28 2.9
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 28 3.8
At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochon... 27 6.7
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochon... 27 6.7
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 27 6.7
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 8.9
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ... 27 8.9
>At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapiens,
EMBL:HSORFKG1O
Length = 963
Score = 29.9 bits (64), Expect = 0.95
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 284 VRKLLCQRCHSR*WFGRCRTRSPGMSWIEF 195
+ L Q C WFG C R+ WIEF
Sbjct: 420 LESLFTQFCLHSLWFGNCNIRAIAFLWIEF 449
>At4g26030.1 68417.m03748 hypothetical protein
Length = 220
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 197 IRSSSYQGSSFYIC-QTTTCYDTSDIIIFAPELFDLQSSAIPRLDTHH 337
I S ++ S +IC + + +DTS +++ EL ++ RL HH
Sbjct: 147 IYSLPFEKDSSFICLKCNSLFDTSQMLVVHTELIHSKNETKKRLKLHH 194
>At2g35240.1 68415.m04323 plastid developmental protein DAG,
putative similar to plastid protein [Arabidopsis
thaliana] gi|2246378|emb|CAB06698
Length = 232
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2
Query: 278 FAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCD 457
F+P +F IP L TR S L + + S PT+ A P++PGCD
Sbjct: 39 FSPTIFHAVGY-IPALTRFTTIRTRMDRSGGSYSPLKSGSNFSDRPPTEMA--PLFPGCD 95
Query: 458 YK 463
Y+
Sbjct: 96 YE 97
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
TBP (TATA-binding protein) -interacting protein 120
(TIP120); contains TIGRFAM profile TIGR01612:
reticulocyte binding protein
Length = 1866
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 1 VRRHSLRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAG 135
V++ +L L + + TSS+HL++ L+ SL RSK E F AG
Sbjct: 852 VQKIALSLGHICSNETSSSHLKIALDLLFSL-SRSKAEEILFAAG 895
>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 748
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 430 GGVCRFNTTNVHFGRERGRNIEMERT 353
GG C ++ FG +RGR EM+R+
Sbjct: 176 GGECDLQDQSMAFGSDRGRFTEMKRS 201
>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 745
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 430 GGVCRFNTTNVHFGRERGRNIEMERT 353
GG C ++ FG +RGR EM+R+
Sbjct: 176 GGECDLQDQSMAFGSDRGRFTEMKRS 201
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 374 PSSLPTKVDISSVEPTDTAIEPVYPGCD-YKTVAALMM 484
P +PT D++S P+ ++P YP + + +AA M+
Sbjct: 37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATML 74
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 293 FDLQSSAIPRLDTHHLPETRRPLHFDIP 376
F Q + P +T + E +PLH DIP
Sbjct: 336 FSSQPNHFPHQNTQAVSEVHKPLHQDIP 363
>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
protein similar to zinc finger protein OBP2 GI:5059394
from [Arabidopsis thaliana]
Length = 340
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 329 THHLPETRRPLHFDIPSSLPTKVDISSV 412
+HH P+ P H + ++ T VD SS+
Sbjct: 46 SHHFPQNPNPNHHHVETAAATTVDPSSL 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,084,289
Number of Sequences: 28952
Number of extensions: 235290
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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