Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   1.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.3  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.2  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 621 PDKSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEISRLSQIKPAGSTPG 472
           P +S H+L T +  +PPN   AV  S L     G+ S+ S+ +P G T G
Sbjct: 44  PLESNHKLVTFILKNPPNLNPAVQGSSLT---EGKRSKRSK-RPNGDTNG 89


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 636 RYRN*PDKSLHQLRTAMHHH 577
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 16/59 (27%), Positives = 20/59 (33%)
 Frame = -2

Query: 604 PTKNGHAPPPTESRKSC*SVNPSGVRAW*DFPVESN*AGRLHSWWCPSVNSFKFQLCNH 428
           P  N H    T   K C  V  + +  W    V      RL    CP +  +K  L  H
Sbjct: 191 PKVNSHGKIKTFKCKQCDFVAITKLEQWNHSKVHIREDKRLTCPKCPFITEYKHHLEYH 249


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  FEQIRVLKAG*KCCLNISCME**NMISVLFC 148
           F+QI V+ +  K  LN  C E   +  + FC
Sbjct: 223 FDQIVVILSKVKSILNKKCCEKCGLKKIEFC 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,714
Number of Sequences: 336
Number of extensions: 3643
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)