Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.61 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    29   0.81 
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   3.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.7  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   7.6  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   10.0 

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 141 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 227
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 156 QNSEVMINRDNWGHSYCDVRGEILGSSQENISEAFAKGVF-INQERKLEVRRRLDT 320
           +N+   +  DNW H+Y   R EI+  S  +++ A  KG++   Q ++     RL T
Sbjct: 425 KNAHKYVLSDNWSHAY---REEIVRQSLHHLTVAKEKGIWSFRQPKRQNEMPRLKT 477


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 207 DVRGEILGSSQENISEAFAKGVFINQ-ERKLEVRRRLDT---ALVLTVNM 344
           D +  +LG+    I+ A     FINQ  RK  +RRR D+   AL+++V M
Sbjct: 126 DYQNSVLGNVTNRINGAAMSIPFINQILRKTSIRRRRDSIILALLISVLM 175


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -3

Query: 567 QERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 388
           +   V L  LP+ G  E        P  + P  ALP  PLSFS     P ++     PE+
Sbjct: 398 ENELVKLFFLPLDGDVESPH-----PTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 387 A 385
           A
Sbjct: 452 A 452


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 337 TVRTRAVSNRLRTSNFR-S*LMKTPLANASLMFSCDDPRISPLTSQY 200
           +++  ++ ++L+  +   S L  TP +N+++ +   DP ++  +SQY
Sbjct: 439 SIKPMSIPSQLKQESVEVSNLSSTPRSNSTITYPDMDPMVASFSSQY 485


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 618  DKSLHQLRTAMHHHPPNQERAVNLSILPV 532
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 258 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 425
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 426 VWLQS*NLKELTEGHHQEW 482
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 549 LSILPVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSFATIL 424
           +SIL V+GP +  R+      G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,943
Number of Sequences: 5004
Number of extensions: 60661
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)