Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0130 - 963856-965454                                             30   1.5  
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    30   1.9  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   2.6  
07_03_0794 + 21562995-21563004,21564151-21565799                       29   4.5  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   4.5  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    29   4.5  
03_06_0189 + 32214702-32215154                                         28   7.8  
01_07_0109 - 41131714-41132988                                         28   7.8  

>07_01_0130 - 963856-965454
          Length = 532

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 606 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISRLSQIK 493
           H +   +   PPN     NL +LP+ GP ++ + + +K
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGKSTLVK 232


>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 492 PAGSTPGGALPSIPLSFSFATILPPESKIFGFP 394
           P+ +  GG  P +  SF    IL P+SK++GFP
Sbjct: 71  PSSAAAGGGGPGMTTSFR---ILCPQSKVYGFP 100


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 425  SMVAKLKLKGIDGRAPPGVEPAGLI*LNREISPGPDTGR--IDRLTALS*FGGWWCMAVL 598
            S++ +L+L+ +D R  PG+E A    +   I  GP   +  I  ++++   G + C    
Sbjct: 915  SLIPQLQLQTLDVRCSPGIEWAANGPVQPFIQAGPSKPKPLIHGISSMEAMGKYRCGVPC 974

Query: 599  SWWSDL 616
            SW  DL
Sbjct: 975  SWSLDL 980


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 280 LMKTPLANASLMFSCDDPRISPLTSQYECPQLSLLIITSE 161
           L  +P     L +   D   +PL+SQ+EC  LS L  T +
Sbjct: 7   LQNSPWQANPLKYEFSDSPYTPLSSQFECDNLSALTNTPD 46


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 497 LSRQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLP---AEPL**RRR 357
           +SR+ P +  PFR    +    P +P +PKS  S++ P   A P   RRR
Sbjct: 1   MSRREPAVSSPFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRR 50


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 609 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSF 436
           LH L T     P  P +  +   +ILP   PG  S ++     G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 489 AGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 385
           A + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 31  AAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>01_07_0109 - 41131714-41132988
          Length = 424

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 537 PVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 385
           P SG    + L++ + + +   G  P  P+SF+  T   P+S +   P  A
Sbjct: 121 PFSGESATADLTRTRLSANATDGKNPLYPVSFAAVTSCAPDSLLAKLPAGA 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,151,614
Number of Sequences: 37544
Number of extensions: 467410
Number of successful extensions: 1365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)