Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   6e-05
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   7.9  

>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/42 (61%), Positives = 30/42 (71%)
 Frame = +3

Query: 216 GEILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           GEILG  + N  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 2   GEILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 249 SEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 13  AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 249 SEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 32  AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 249 SEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 15  AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   + N  E+ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   + N  E+  + VFINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   + N  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +3

Query: 219 EILGSSQENISEAFAKGVFINQERKLEVRRRLDTALVLTVN 341
           + L   + N  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +3

Query: 249 SEAFAKGVFINQERKLEVRRRLDT 320
           ++AFAK VFINQERKLE RRR DT
Sbjct: 5   AKAFAKNVFINQERKLEDRRRSDT 28


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 548 CQSFRCPGLVRFPG*VKLS-RQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 372
           C S +CPG V +PG V  S R AP    P R++     L   SPRSP++  SR  P E +
Sbjct: 343 CASGKCPGCVYYPGMVPRSPRDAP--KEP-REYASPPPLPSKSPRSPRTSESRSPPREEM 399


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 186 NWGHSYCDVRGEILGSSQENISEAF 260
           N+GHSY  +RG I G +Q+  S A+
Sbjct: 635 NFGHSYVQIRGYIGGEAQKLFSGAY 659


>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -1

Query: 287 FLIDENTFGKCFADVLLRRSKNF---TSNVAIRMPPVI 183
           +++D+N+F  C  + LLRR+K     T+ +A++  P++
Sbjct: 225 WIVDKNSFDSCQVNTLLRRNKQLMECTTPLALKYYPLV 262


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 436 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 344
           C+   PG  +   PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 403 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 314
           W+PG CPP  C+    +L +  TV +  +S
Sbjct: 80  WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 427 TPPGV-QNLWFPGSCPPSHCSNVGG 356
           +P GV +N W PGS   S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,013,587
Number of Sequences: 59808
Number of extensions: 481032
Number of successful extensions: 1223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)