Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA...    31   1.9  
AE013599-1608|ABC66062.1| 1526|Drosophila melanogaster CG3845-PC...    31   1.9  
AB096103-1|BAD83642.1| 1526|Drosophila melanogaster hypothetical...    31   1.9  
AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p pro...    30   3.3  
AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA...    30   3.3  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   7.7  
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch...    29   7.7  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   7.7  

>AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA,
           isoform A protein.
          Length = 984

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 618 DKSLHQLRTAMHHHPPNQE 562
           ++ +H L TAM HHP NQ+
Sbjct: 211 EQQIHSLETAMEHHPSNQQ 229


>AE013599-1608|ABC66062.1| 1526|Drosophila melanogaster CG3845-PC,
           isoform C protein.
          Length = 1526

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 427 TPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRTRAVSNRLRTSNFR 287
           TPP +   W P S  P H        D +F  R R + N+L    F+
Sbjct: 527 TPPPITGRWIPPSLRPQHGLTQSEKNDAVFR-RVRGILNKLTPEKFQ 572


>AB096103-1|BAD83642.1| 1526|Drosophila melanogaster hypothetical
           protein protein.
          Length = 1526

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 427 TPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRTRAVSNRLRTSNFR 287
           TPP +   W P S  P H        D +F  R R + N+L    F+
Sbjct: 527 TPPPITGRWIPPSLRPQHGLTQSEKNDAVFR-RVRGILNKLTPEKFQ 572


>AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p
           protein.
          Length = 261

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 389 ASGKPKILDSGGSMVAKLKLKGIDGRAPPGV--EPAGLI*LNREISPGPDTGRIDRLTAL 562
           ASG   I  SG  +V  + LK I  R PP +  +   ++ L R++SP     +I   + L
Sbjct: 43  ASGPTTIGPSGDILVPPVTLKVIPFRMPPDLPYDDRNML-LGRQLSPHLSIYKIQLTSTL 101

Query: 563 S*F--GGWWCMAVLSWWSDLSG 622
           S F     + +AV  W+  +SG
Sbjct: 102 SAFLRISGFVLAVFVWFVGISG 123


>AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA
           protein.
          Length = 261

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 389 ASGKPKILDSGGSMVAKLKLKGIDGRAPPGV--EPAGLI*LNREISPGPDTGRIDRLTAL 562
           ASG   I  SG  +V  + LK I  R PP +  +   ++ L R++SP     +I   + L
Sbjct: 43  ASGPTTIGPSGDILVPPVTLKVIPFRMPPDLPYDDRNML-LGRQLSPHLSIYKIQLTSTL 101

Query: 563 S*F--GGWWCMAVLSWWSDLSG 622
           S F     + +AV  W+  +SG
Sbjct: 102 SAFLRISGFVLAVFVWFVGISG 123


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
            uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -3

Query: 615  KSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSI 454
            +S HQ+  ++++ PP        S  P++ P      +Q+   G+ P G + S+
Sbjct: 1195 QSSHQMPPSLYNTPPPSHLLYTASASPMASPALNCNYTQVHGHGTPPVGQVASV 1248


>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
           mismatch-specific thymineDNA glycosylase protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -3

Query: 615 KSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSI 454
           +S HQ+  ++++ PP        S  P++ P      +Q+   G+ P G + S+
Sbjct: 552 QSSHQMPPSLYNTPPPSHLLYTASASPMASPALNCNYTQVHGHGTPPVGQVASV 605


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
            protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -3

Query: 615  KSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSI 454
            +S HQ+  ++++ PP        S  P++ P      +Q+   G+ P G + S+
Sbjct: 1195 QSSHQMPPSLYNTPPPSHLLYTASASPMASPALNCNYTQVHGHGTPPVGQVASV 1248


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,795,899
Number of Sequences: 53049
Number of extensions: 753136
Number of successful extensions: 2267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)