Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    29   3.0  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 469 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 365
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 558 AVNLSILPVSGPGEISRLSQIKPAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 382
           A N S+   S P  + R +      +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 381 RAI 373
           R++
Sbjct: 572 RSM 574


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 576 PPNQERAVNLSILPVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSFATILPP 418
           PP  E A   S+ P+  PG +     + P G  P    P +P     +T LPP
Sbjct: 293 PPGVESAPGASVAPLL-PGGLDLNLGLPPLGFNPNMPPPGMPPMGMMSTSLPP 344


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 516  ISRLSQIKPAGSTPGGALPSIPLSF 442
            ++ LS +KP+G+T GGA+P  P SF
Sbjct: 1068 VNILSDLKPSGNTNGGAVP--PASF 1090


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,399
Number of Sequences: 27780
Number of extensions: 367323
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)