Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021262
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   3.8  
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    28   5.0  
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ...    28   6.6  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   6.6  
At3g47400.1 68416.m05154 pectinesterase family protein similar t...    27   8.7  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   8.7  

>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = -1

Query: 293 LSFLIDENTFGKCFADVLLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSII 117
           +  +++EN     F  + L    +F   + I  P VI + HY+G +  +  + ++  +I
Sbjct: 338 IQVMVEENVADYIFEILRLSAEHSFRKRLVIGFPSVIRVLHYVGEVPCHPFQIQTLKLI 396


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = -2

Query: 367 NVGGSLDDIFTVRTRAVSNRLRTSNFRS*LMKTPLANA-SLMFSCDDP---RISPLTSQY 200
           N GG     FT+ T A S+ L+  + R   M   L +  S+    DDP   ++ PL S Y
Sbjct: 149 NSGGETLYTFTILTTASSSALQWLHDR---MPVILGDKDSIDTWLDDPSTTKLQPLLSPY 205

Query: 199 ECPQLSLLIITSEF*KPTK*NRDHILLFHARNIQAAFLARF 77
           E   L    +TS   KPT    + I     +  Q + +++F
Sbjct: 206 EKSDLVWYPVTSAIGKPTFDGPECIQQIPLKTSQNSLISKF 246


>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
           protein DNA binding protein - Hordeum
           vulgare,PID:e1334094
          Length = 247

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 537 PVSGPGEISRLSQIKPAGSTPGGALPSIPLSFSFATILPPE 415
           P S  G  ++ S    +G+ PGG  PSI L+  +A  L P+
Sbjct: 80  PKSSSGNNTKTSLTANSGN-PGGGSPSIDLALVYANFLNPK 119


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 439 LCNHTPPGVQNLWFPGSCPP 380
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g47400.1 68416.m05154 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Vitis vinifera
           GI:15081598, Lycopersicon esculentum SP|Q43143
           SP|P14280; contains Pfam profile PF01095 pectinesterase
          Length = 594

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 613 IAPPTKNGHAPPPTESRKSC*SVNPSGVRAW*DFPVESN*AGRLHSWWC 467
           ++PP +   +P PT S  +    +P  V A    P+ +       +WWC
Sbjct: 42  VSPPPETAPSPTPTSSPSTTSPPSPGPVAA--PSPINNGSVSGDMTWWC 88


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 288 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 398
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,011
Number of Sequences: 28952
Number of extensions: 345898
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)