Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021261
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   7.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   7.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +2

Query: 323 SLTLKSVTSVTFTTVHWKT*KLYVHGSSRRRVTTYNWIRPRYCRARPLRMFTWK 484
           SL+L S  +++   + W +     HG    R    +W+   Y R   +   T+K
Sbjct: 362 SLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFK 415


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 127 WFFNCFSCSGVSLLYLSFLHEIIIDRH 47
           WF NC +   V++   + LH+ +  R+
Sbjct: 225 WFINCTAKGRVAVWMCNNLHKALESRN 251


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 127 WFFNCFSCSGVSLLYLSFLHEIIIDRH 47
           WF NC +   V++   + LH+ +  R+
Sbjct: 225 WFINCTAKGRVAVWMCNNLHKALESRN 251


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 496 SSARLPCEHP*WPRSAVTW 440
           S A + C+   +PR  VTW
Sbjct: 714 SDAAVECKADGFPRPVVTW 732


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,927
Number of Sequences: 336
Number of extensions: 3461
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)