Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021261
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    33   0.030
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.21 
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    28   1.1  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    27   3.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.0  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 56  DDYFMQEGEVEERDPTT-GKTIKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYF-SFL 229
           +DY     + +    TT G+TI +    YE  +D E   + S+ + FK+++T   F +FL
Sbjct: 41  NDYTQNNAQFQNAQTTTFGRTISRVKAYYEIPEDDELDELASIPQWFKKNVTSNIFKNFL 100

Query: 230 IY 235
            Y
Sbjct: 101 HY 102


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 128 TLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLLDIMLIFGTLQG 289
           TLKY+F +D  E+Y +    + + S +D +F  L   AVN  L+   +F  LQG
Sbjct: 111 TLKYKFGEDASETYASEKCTSHQLSDSD-FFKSLQTSAVN--LEFDSLFEKLQG 161


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 56  DDYFMQEGEVEER-DPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLI 232
           DD      E E+  +  T +++K PTL Y FD D  +      KR FK     GY    +
Sbjct: 131 DDTLQDTLETEKNLNSKTSESLKSPTLSYPFDLDSLD------KRIFKLESKIGYADEPL 184

Query: 233 YDAVNDLLD 259
            + +N  ++
Sbjct: 185 SELLNKCME 193


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 145 KLVFQSWFFNCFSCSGVSLLYLSFLHEIIIDRHYSCCATMFRFFIS 8
           +LV  SW F    C GVSL    FL  I+    YS  +     + S
Sbjct: 43  ELVSMSWLFRSTICFGVSLFLSFFLVRILWGIAYSYNSNSMSIYFS 88


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +2

Query: 92  RDPTTGKTIKKPTLKYEFDKDCE 160
           +DP T +++ +  +K+ ++KDC+
Sbjct: 310 KDPATDRSLGRGFIKFRYEKDCQ 332


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 271 IW--NFARQNGFQVYVCTMELDPQVCYKRNIHNRTLEDIEIICTR 399
           IW   F    GF V  CT++   ++ ++  +H+  LE + ++C +
Sbjct: 140 IWVEKFIHNGGFGVVFCTIDKISRLEWREELHDSILEQL-LLCVK 183


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 136  FQSWFFNCFSCSGVSLLYLSFLHEIIIDRHYS 41
            F  WFF C   SG  L   + L  +++  H S
Sbjct: 1950 FMCWFFGCTLISGPQLFLKNNLKPLLLATHAS 1981


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 535 DGTSKPLRPSQLSMEDYLQLDDWTPNKATP 624
           DGT   ++PS+LS+     L    PNK  P
Sbjct: 906 DGTKSTIKPSKLSLARVSVLRGEGPNKGLP 935


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +2

Query: 8   RDKEAEHGGTARIMSIDDYFMQEGEVEERDPTTGKT-IKKPTLKYEFDKDCEESYVNSLK 184
           +D+   H G +  M++DD  + +   E  + T+G + +++    Y+F         + L 
Sbjct: 91  KDEAYSHHGYSSTMALDDSSLAQTYHEYEEGTSGNSPLRRAIGSYDFLHPRPSGNSSRLD 150

Query: 185 RAFKRSITDGYFS--FL-IYDAVND 250
           R   R  T  + S  FL  Y + ND
Sbjct: 151 RNSSRPFTSSFHSAPFLSSYGSSND 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,117
Number of Sequences: 5004
Number of extensions: 57487
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)