Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021261
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    59   3e-09
03_05_0306 - 22956474-22956980                                         30   1.6  
09_02_0427 - 9198363-9198485,9198831-9198895,9199029-9199341,919...    29   3.6  
02_04_0023 - 19000591-19001234,19003322-19003496                       29   4.8  
03_02_0720 + 10662494-10663564                                         28   6.3  

>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 10/91 (10%)
 Frame = +2

Query: 5   IRDKEAEHGGTA-RIMSIDDYFMQEGE--VEERDPTTG-------KTIKKPTLKYEFDKD 154
           +RD E E+GG A RI S+DDYFM E E  VE+ + +         K + K  ++Y ++ +
Sbjct: 323 LRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPE 382

Query: 155 CEESYVNSLKRAFKRSITDGYFSFLIYDAVN 247
            EE+Y +S+  AFK+++ +G F+F+I D  N
Sbjct: 383 MEETYRSSMLNAFKKTLDEGNFTFVIVDDRN 413



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = +1

Query: 286 RQNGFQVYVCTMEL-DPQVCYKRNIHNRTLEDIEIICTRFFPTPSHHIQLDPTTL----- 447
           +++G++VY+      DP  C  RN+H  T++D+  +   +   P  +++LD  +L     
Sbjct: 453 KKSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDN 512

Query: 448 LQSAAITDVHMEDVQT 495
           L+  +I +V ME   T
Sbjct: 513 LREHSIQEVDMETEDT 528


>03_05_0306 - 22956474-22956980
          Length = 168

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 383 KLYVHGSSRRRVTTYNWIRPRYCRARPLRMFTWKTCRRSYSRDTR 517
           K   HG+  RR +  +W  PR+   RP    TW++ R+  S  +R
Sbjct: 56  KAQEHGAWSRRASPASWGEPRWLARRP-AFPTWESSRKEASGSSR 99


>09_02_0427 -
           9198363-9198485,9198831-9198895,9199029-9199341,
           9199482-9199620,9199705-9199767,9199905-9199986,
           9200079-9200157,9200996-9201175,9201261-9201520,
           9201650-9201734,9201813-9201959,9202067-9202177
          Length = 548

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 366 YTGRHRNYMYTVLPDAESPHTTGSDHVTAERGHYGCSHGRRADEVIAEIH 515
           YTG H +Y Y  + D+       ++ V  + G         AD VIAE+H
Sbjct: 461 YTGLHHSYAYAQVVDSLESSYGVNEKVILKYGGLAKLCLEEADNVIAEVH 510


>02_04_0023 - 19000591-19001234,19003322-19003496
          Length = 272

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
 Frame = +2

Query: 98  PTTGKTIKKPTLKYEFDKDCEESYV--NSLKRAFKRSITDGYFSFLIYDAVNDLLDIMLI 271
           P T   +K P+ K  +D+   E Y   +  KRAF   +  G     IY ++  LL +  +
Sbjct: 78  PATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSG--GRFIYASLLRLLVLKFV 135

Query: 272 FGTLQGRMVSRYTYVQWSLTLKSVTSVTFTTVHWKT*KLYVHGSSRRRVTTYN 430
                 + V     ++  + L S+   T  TV W+   +++   +   +   N
Sbjct: 136 LSMSASKDVLALASLE--VDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLAN 186


>03_02_0720 + 10662494-10663564
          Length = 356

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 405 PDAE-SPHTTGSDHVTAERGHYGCSHGRRADEVIAEIHEKLSETRRNQQ 548
           P +E S    G +   A RG      GRR    +A  HE+L   R   Q
Sbjct: 265 PQSEASSDAGGGEEAQATRGRARGGKGRRRSSTVAAAHERLYAARNRAQ 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,257
Number of Sequences: 37544
Number of extensions: 365616
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)