Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021261
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                87   1e-17
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  34   0.13 
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              30   2.1  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              30   2.1  
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)                 29   2.8  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   6.4  
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                28   8.5  
SB_52823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2    LIRDKEAEHGGTA-RIMSIDDYFMQEGEVEERDPTTGKTIKKPTLKYEFDKDCEESYVNS 178
            LI+DKE   G  A RI+S+DDYF+ E E  E+DP TGK IKK   +Y ++ + EE Y+ S
Sbjct: 1268 LIKDKEVSSGAHAPRILSLDDYFLTEVEKTEKDPETGKRIKKKVTEYVYEPEMEEVYMAS 1327

Query: 179  LKRAFKRSITDGYFSFLIYDAVNDLLDI 262
            L +AF +++ DG+F  ++ DA ND +++
Sbjct: 1328 LFKAFTKTLDDGFFPMVLMDATNDKVEM 1355


>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 241

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 445 TWSDPVVCGDSASGRTVYI*FLCLPVYGCECYACNRLEGQAPLYIRIPGNHSALQSSKYQ 266
           T S    CG+  +   +    LC P Y CEC +C++L      + R+  + S  Q SK Q
Sbjct: 154 TQSHSTACGNCGTKHDMSARSLC-PAYNCECNSCHKLHH----WERVCKSKSKTQPSKVQ 208

Query: 265 H 263
           H
Sbjct: 209 H 209


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 434 IRPRYCRARPLRMFTWKTCR 493
           +RPRYC  RP R +T +TCR
Sbjct: 34  LRPRYCTLRPCR-YTLRTCR 52



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 434 IRPRYCRARPLRMFTWKTCR 493
           +RPRYC  RP R +T +TCR
Sbjct: 76  LRPRYCTLRPCR-YTLRTCR 94



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 434 IRPRYCRARPLRMFTWKTCR 493
           +RPRYC  RP R +T +TCR
Sbjct: 132 LRPRYCTLRPCR-YTLRTCR 150


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 8    RDKEAEHGGTARIMSIDDYFMQEGEVEERDPTTGKTIKKPTLKYEFDKDCEESYVNSLKR 187
            + KEAE     +   + +  + E E ++R     + ++K   K E DK  E+   +SLKR
Sbjct: 966  KQKEAERAKKEKERLLQEDKLHEKEEKDRKDKEKRKVEKE--KREKDKQVEKEKKDSLKR 1023

Query: 188  AFKRSITD 211
              KR  +D
Sbjct: 1024 VKKRKDSD 1031


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 375 FQCTVVNVTLVTDLRVKLHCTYVYLETI--LPCKVPN 271
           F+C + +  L T   + +HCT V+ ET+  +P  +PN
Sbjct: 35  FKCMICHKKLYTGPGLAIHCTQVHKETVSAIPNSLPN 71


>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
          Length = 209

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 92  RDPTTGKTIKKPTLKYEFDKDCEESY 169
           RD  TG++++   +++E D+DCE +Y
Sbjct: 153 RDQKTGESLQYAFIEFEKDEDCERAY 178


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 462 HYGCSHGRRADEVIAEIHEKLSETRRNQQTASAITTL 572
           H GCSH  R DE+ +E+ + L E    + TA+  T L
Sbjct: 95  HPGCSHTLRDDEIKSEV-QSLKEAYMAKSTAAVQTAL 130


>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 437 RPRYCRARPLRMFTWKTCRRSYSRDTRETER 529
           +P  C  +P R  TWK   R  +    ET+R
Sbjct: 151 QPAACSKQPFRRLTWKKAAREKANSILETDR 181


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 378  HRNYMYTVLPDAESPHTTGSDHVTAERGHYG 470
            HR+Y +   PDA   +T GS + T   G+ G
Sbjct: 1488 HRDYAHNCHPDANCTNTKGSFYCTCHVGYSG 1518


>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 95  DPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRS 202
           DP+   + +K TLK    K  EE+ +N ++  F  S
Sbjct: 685 DPSCATSSRKGTLKRSLSKSYEETTINKMRVVFNAS 720


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 354 HSQPYTGRHRNYMYTVLPDAESPHTTGSDHVT 449
           H+ P+  RH     TVLP   + HT  S H T
Sbjct: 315 HTAPF--RHATTTITVLPSRYNNHTASSSHAT 344


>SB_52823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 14  KEAEHGGTARIMSIDDYFMQEGEVEERDPTTGKTIKKPTLKYE 142
           ++  +   A + ++ DY+M+    E  DPT   T+ K  + Y+
Sbjct: 242 RQCPNANMASVKTLYDYYMRVWSAEIEDPTNIYTVMKTMIPYK 284


>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 GKTIKK-PTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVN 247
           GKT+KK PTLK + D   +  Y  +L R       DG+    ++   N
Sbjct: 213 GKTMKKVPTLKRDLDARAQSEYYRNLFRLPVEEKLDGHCECTLWSPHN 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,612,526
Number of Sequences: 59808
Number of extensions: 453116
Number of successful extensions: 1518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)