Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021261
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical pr... 33 0.20
AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeri... 33 0.20
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 32 0.35
Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical p... 30 1.9
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical p... 29 4.3
Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.3
U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical pr... 28 5.7
U28738-14|AAA68316.2| 129|Caenorhabditis elegans Hypothetical p... 27 9.9
>Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical
protein F48C11.1 protein.
Length = 364
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 116 IKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLLDIMLIFGTLQGRM 295
+++ YE D EES +K+ F+R ITD + F+ D +I L+FG+ +
Sbjct: 294 LRRSFKNYEGDNS-EESAREFIKKLFRRCITDRHKFFVFETTATDTGNIDLVFGSAVAHI 352
Query: 296 VS 301
V+
Sbjct: 353 VN 354
>AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 364
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 116 IKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLLDIMLIFGTLQGRM 295
+++ YE D EES +K+ F+R ITD + F+ D +I L+FG+ +
Sbjct: 294 LRRSFKNYEGDNS-EESAREFIKKLFRRCITDRHKFFVFETTATDTGNIDLVFGSAVAHI 352
Query: 296 VS 301
V+
Sbjct: 353 VN 354
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 95 DPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVND 250
D T KT+++ +++F+K+ E NSL A +++++ G+ + L + D
Sbjct: 64 DEWTKKTVQRVRKEHQFEKNDLEKVDNSLNSAARKAVSSGFDALLCISQLED 115
>Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 HSQPYTGRHRNYMYTVLPDAES 419
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical
protein T26F2.1 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 HSQPYTGRHRNYMYTVLPDAES 419
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 HSQPYTGRHRNYMYTVLPDAES 419
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 348 LVTDLRVKLH-CTYVYLETILPCKVPNISIMSRRS 247
L DLRV + C Y+Y E I+P K + + +RS
Sbjct: 851 LAEDLRVYVFGCIYIYFELIVPSKCLTLFFLKKRS 885
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 348 LVTDLRVKLH-CTYVYLETILPCKVPNISIMSRRS 247
L DLRV + C Y+Y E I+P K + + +RS
Sbjct: 851 LAEDLRVYVFGCIYIYFELIVPSKCLTLFFLKKRS 885
>Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 375 FQCTVVNVTLVTDLRVKLHCTYVYLETILPCKVPNIS-IMSRRSL 244
F C VN+ ++ LR + TYV + K N+S I +RR L
Sbjct: 181 FTCMFVNLAIILHLRFARNDTYVKFKKFFTKKQSNLSKIQARRDL 225
>Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 375 FQCTVVNVTLVTDLRVKLHCTYVYLETILPCKVPNIS-IMSRRSL 244
F C VN+ ++ LR + TYV + K N+S I +RR L
Sbjct: 181 FTCMFVNLAIILHLRFARNDTYVKFKKFFTKKQSNLSKIQARRDL 225
>U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical
protein C48C5.3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 220 KVPVGYASLECSFQ*IHVRLLTVF--IKLVFQSWFFNCFSC 104
K P+ YA+ SF+ + + + F VF W+ CF+C
Sbjct: 131 KFPLRYANWVTSFKGVSLAVFVWFGCFVFVFICWYLECFTC 171
>U28738-14|AAA68316.2| 129|Caenorhabditis elegans Hypothetical
protein T28D9.1 protein.
Length = 129
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 399 VLPDAESPHTTGSDHVTAERGHYGCSHGRRADEVIAEIHEKLSETRRNQ 545
V P E P TGSD V +G + +E AE E+ +ET +
Sbjct: 16 VEPVEEKPTETGSDDVVVIDEKTSEQNGEKTEETQAEATEEKNETEAEE 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,634
Number of Sequences: 27780
Number of extensions: 330015
Number of successful extensions: 1221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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