Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021261
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 268 DIWNFARQNGFQVYVCTMELDPQVCYKRNIHNRTL 372
           D+ NF+ +   + Y C  E  P + Y+  +  R +
Sbjct: 180 DLVNFSARRNVEYYSCCPEPYPDITYEIRLRRRPM 214


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 231 IRNEKYPSVMLLLNALFNEFTYDSSQSLSNSYFRVGFL 118
           ++ +   SV  LL+ +F+ +TYD+   L+  ++ +GF+
Sbjct: 483 VKGDVAGSVEALLD-IFDTYTYDTICQLNIVHYGIGFI 519


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 373 PVYGCECYACN 341
           P  GCEC  CN
Sbjct: 431 PPIGCECKTCN 441


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 357  SQPYTGRHRNYMYTVLPDAESPHTTGSDHVTAERGHYGCSH 479
            ++P  G++RNY    L +A      G   V     +YG  H
Sbjct: 1033 TRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPH 1073


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 504  AEIHEKLSETRRNQQTA 554
            AE+H +  ET RN+  A
Sbjct: 1125 AEVHNRSRETARNRMAA 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,476
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)