Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021260X
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   110   8e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   110   8e-26
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   2.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.2  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   6.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   8.7  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   8.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  110 bits (265), Expect = 8e-26
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +3

Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
           AESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++R
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121



 Score = 81.0 bits (191), Expect = 7e-17
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +1

Query: 64  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 243
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 244 HQT 252
           HQT
Sbjct: 60  HQT 62


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  110 bits (265), Expect = 8e-26
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +3

Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
           AESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++R
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKR 121



 Score = 81.8 bits (193), Expect = 4e-17
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 64  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 243
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 244 HQT 252
           HQT
Sbjct: 60  HQT 62


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 173
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 138 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 233
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 239 LVTKPGRIMGYRTCCRPNSACP 304
           L  +P R++     C+PN  CP
Sbjct: 410 LAKRPTRVLHCEKTCKPNPYCP 431


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +3

Query: 144 RVQGAHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQAESWGTGRAVARIPRVRG 308
           R    HT G GQ      V EL+   +       P  AE W  GR + R   +RG
Sbjct: 646 RALTGHTDGRGQLSLLNIVVELKK--VSNHPYLFPGAAEKWMMGRKMTREDTLRG 698


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 324 TYEYHHHGHAEFGRQH 277
           T++Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,425
Number of Sequences: 5004
Number of extensions: 32683
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)