Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021260X
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 124 3e-29
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 36 0.019
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 35 0.025
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 32 0.23
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 30 0.94
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 1.6
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 29 2.2
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 29 2.2
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 2.9
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 2.9
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 3.8
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 3.8
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4) 27 5.0
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 27 5.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2) 27 8.7
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 27 8.7
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 124 bits (299), Expect = 3e-29
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH +VN++QRR
Sbjct: 61 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRR 118
Score = 74.5 bits (175), Expect = 3e-14
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +1
Query: 73 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 252
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 35.5 bits (78), Expect = 0.019
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +3
Query: 234 GGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 234 GGWSPNQAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 389
GG WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 35.1 bits (77), Expect = 0.025
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +3
Query: 234 GGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 268
HH RH R + +HHH H E+ R+H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 372 RTYVH-HDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRP 253
R Y H CYRR R + YHHH + +RY RP
Sbjct: 216 RCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRYHHHRP 254
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 PNQAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 365
P +E +G ++ R PR RGGG G G G RGGR
Sbjct: 982 PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 369 TYVHHDTCYRRHPDRTYEYHHHGHA 295
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 372 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 268
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHHGH 298
HH + H + YHHH H
Sbjct: 229 HHHNHHHHHHHHYHHYHHHHH 249
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 366 YVHHDTCYRR-HPDRTYEYHHHGHAEFGRQHVRYPMI--RPG 250
Y HH + H + +++HHH H H R+ +I RPG
Sbjct: 1032 YHHHRRRHHHYHHQQQHQFHHHHHHTHYNYHYRHFLIIDRPG 1073
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -3
Query: 372 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIR 256
R Y HH C H Y Y HH H + R H YP R
Sbjct: 15 RCYRHHHYCCYCHHRYCY-YRHH-HYCWYRHHYHYPCYR 51
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHH 304
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 171 PGQ*CSRFYVQELEAALLREQG-GWSPNQAESWGTGRAVARIPRVRGGGT 317
P Q C + E+ +L G G P AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 366 YVHHDTCYRRHPDRTYEYHHHGH 298
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 173 WSMMFTF-LCPRTRGSPTA*ARRLVTKPGRIMGYRTCCRPNS 295
WS ++ +C +T G+ T RL T P G R C PNS
Sbjct: 118 WSTWGSWSVCSKTCGTGTQTRDRLCTNPSPAFGGRYCEPPNS 159
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHH 304
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHHGH 298
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 369 TYVHHDTCYRRHPDRTYEYHHHGHA 295
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)
Length = 434
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 225 REQGGWSPNQAESWGTGRAVARIPRVRGGG 314
R + W P ++ +W +A+ P VR GG
Sbjct: 120 RPEAAWGPKRSGAWLGSQALVPQPAVRSGG 149
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 345 YRRHPDRTYEYHHHGHAEFGRQHVRYPMI 259
Y +HP T+ YH H R H ++P +
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQV 259
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 345 YRRHPDRTYEYHHHGHAEFGRQHVRYPMI 259
Y +HP T+ YHH H + ++ ++P +
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQV 440
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 260 IMGYRTCCRPNSACPWWWYS*VR-SGC 337
I+ +R CCR N C W+W R +GC
Sbjct: 241 IVSFRGCCRVN--CNWYWSGWSRCTGC 265
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 140 GRGLAAPCTVSLFSEYTDTKGRATDRL 60
G+GL C+V+L S Y T+G+ RL
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRL 3189
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -3
Query: 369 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRPGLVTSLLAHAVGLPRVLGHR 193
+Y HH +RRH YHHH H + H + +I L+ S+++ A+ + ++ +R
Sbjct: 261 SYYHHHH-HRRHHLN--HYHHHYHLD---DHFIFIIIITTLIVSIISVAITVHILIPYR 313
>SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)
Length = 385
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 31 RYSFAKVAK*SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIR 165
R FAKV K S+ + RP++ ++ S+ G+ P + + P+R
Sbjct: 270 RRDFAKV-KSSIKINRPMIGIHIRTSDHHFGSDNPNSYRTRDPLR 313
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 270 TGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 365
+G ++ R PR RGGG G G G RGGR
Sbjct: 501 SGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGR 533
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -3
Query: 366 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQH 277
Y HH + +H + +HHH H H
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHH 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,279
Number of Sequences: 59808
Number of extensions: 291375
Number of successful extensions: 919
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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