Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021260X
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   117   4e-27
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   2.5  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   2.5  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   7.5  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  117 bits (281), Expect = 4e-27
 Identities = 50/60 (83%), Positives = 54/60 (90%)
 Frame = +3

Query: 249 NQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
           + AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN+ Q+R
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120



 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +1

Query: 73  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 360 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 277
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 269 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 379
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 377
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 377
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 357 HDTCYRRHPDRTYEYHHHGHAEFGR-QHVRYPMIRPGLVTSLLAH 226
           H +C + + +  ++  H G  E  + +   YPM+R G  T LL H
Sbjct: 471 HASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTGDQTRLLKH 515


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 369 TYVHHDTCYRRHPDRTYEYHHHGHAEF 289
           TY HH   Y      ++E+HHH H  +
Sbjct: 20  TYAHHSHSY----SHSHEHHHHHHGGY 42


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 178 NDVHVSMSKNSRQPYCVSKEAGHQTRPNHGVPDVLSPE 291
           N+ H + S N R PY    +    T+ N   P   +PE
Sbjct: 631 NNYHNNSSNNQRSPYQAQNQQNQPTQQNQHPPREGAPE 668


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 291 IPRVRGGGTHRSGQGAFGNMCRGG 362
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 173 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 60
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 173 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 60
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


>Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical
           protein ZK262.8 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 345 YR-RHPDRTYEYHHHGHAEFGRQHVRYPMIR 256
           YR + PD      HH    F  QH R+P IR
Sbjct: 38  YRTKQPDNRKRALHHPRLRFRCQHPRFPPIR 68


>U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical
           protein D2092.2 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -3

Query: 363 VHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRPGLVTSL 235
           V     +R HP+   E +    A++G   + + ++RP  +  L
Sbjct: 56  VSEGDAFRHHPNEDVEQYFRASAQWGVPAIAWNIVRPAFLWKL 98


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 360 HHDTCYRRHPDRTYEYHHHGH 298
           HH   +  H D+   +HHHGH
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGH 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,487
Number of Sequences: 27780
Number of extensions: 204778
Number of successful extensions: 655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)