Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021260X
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 117 4e-27
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 117 4e-27
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 1.0
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 29 1.0
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.0
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.3
At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4) ide... 28 3.1
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 3.1
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 28 3.1
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 4.1
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 4.1
At1g76010.1 68414.m08825 expressed protein 27 4.1
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 5.4
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 5.4
At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1... 27 5.4
At1g73160.1 68414.m08462 glycosyl transferase family 1 protein c... 27 5.4
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 27 7.1
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 27 7.1
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 26 9.4
At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative... 26 9.4
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 117 bits (281), Expect = 4e-27
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
AESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+ +R
Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 127
Score = 69.7 bits (163), Expect = 8e-13
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 240
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 241 GHQT 252
GHQT
Sbjct: 65 GHQT 68
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 117 bits (281), Expect = 4e-27
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 428
AESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+ +R
Sbjct: 69 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 126
Score = 69.7 bits (163), Expect = 8e-13
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 240
+ ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 4 AAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 63
Query: 241 GHQT 252
GHQT
Sbjct: 64 GHQT 67
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 207 LEAALLREQGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 377
+ AL+R + G P AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 378 TKPW 389
W
Sbjct: 135 ISKW 138
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 29.5 bits (63), Expect = 1.0
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 201 QELEAALLREQGGWSPNQAES-WGTGRAVARIPRVRGGGTHRS-GQGAFGNMCRGGRMFA 374
+E EA +EQG P +AES + + R R R G RS G+G N R
Sbjct: 291 EEEEAGESQEQGEEEPKEAESETNSSSSTNRRGRGRWRGRGRSRGRGPTVNE-RKPNSQD 349
Query: 375 PTKPWRRWHRR 407
P KP R+W +R
Sbjct: 350 PRKPTRQWVQR 360
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 82 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4)
identical to SP|Q43872 Peroxidase 64 precursor (EC
1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis
thaliana}
Length = 317
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 54 EMKSIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 194
E + + +PTF++ R+ G S V + G HT G CS F
Sbjct: 153 ETRQLPAPTFNISQLRQNFGQRGLSMHDLVALSGGHTLGFAH-CSSF 198
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHHGHAEF 289
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 321 YEYHHHGHAEFGRQHVRYPMIRPGLVTSLLAHAVGLPRVLGHRNVNIID 175
+++HHH H + ++H + + +P T ++ + L H ++NI+D
Sbjct: 359 HDHHHHHHQQQQQRHHAFNISQP---THPISTIISPSTSLHHASINILD 404
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 231 QGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 362
QGG Q G GR R +GGG + G G+ G+ CR G
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 360 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 277
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 231 QGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 359
+GG+ Q G GR R R RGGG R G G F N G
Sbjct: 305 RGGYDGPQGRGRGRGRG--RGGRGRGGG--RGGDGGFNNRSDG 343
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 372 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQH 277
R++ H + +H D + E+HHH H R+H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKH 767
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 372 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQH 277
R++ H + +H D + E+HHH H R+H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKH 767
>At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1)
identical to golden2-like transcription factor
GI:13311003 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 Myb-like DNA-binding domain
Length = 420
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 202 WT*KREHH*PGPDVWAP*T-RTGGAWLHPAPSRSFLNTPTLKVGLP 68
WT KR H G D A RT WL PAP+ F P + V P
Sbjct: 221 WTRKR--HIYGVDTGANLNGRTKNGWLAPAPTLGFPPPPPVAVAPP 264
>At1g73160.1 68414.m08462 glycosyl transferase family 1 protein
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 486
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 184 VHVSMSKNSRQPYCVSKEAGHQTRPNHGVPD 276
VHV ++ + + S E+G + R HG+PD
Sbjct: 265 VHVIVNGVDQTKFVYSPESGARFRAKHGIPD 295
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 237 GWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 377
G P Q + +G + R RGG H+ G+G +G GG P
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGP 109
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 237 GWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 377
G P Q + +G + R RGG H+ G+G +G GG P
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGP 109
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 321 RSGQGAFGNMCRGGRMFAPTK 383
R G+G FG++ RGG M A K
Sbjct: 79 RGGKGGFGSLLRGGGMKAGQK 99
>At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative
similar to telomeric DNA-binding protein 1 [Arabidopsis
thaliana] gi|13641340|gb|AAK31590
Length = 619
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 201 QELEAALLREQGGWSPNQAESWGTGRAVARIPRVRGGGTHRSG 329
QEL +LR G WS +Q + R ++ P + GG SG
Sbjct: 576 QELLDRVLRAYGYWSQHQGKH--QARGASKDPDMNRGGAFESG 616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,404,187
Number of Sequences: 28952
Number of extensions: 198457
Number of successful extensions: 650
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -