Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021259
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    52   8e-08
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   4.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.2  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   8.2  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.2  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.2  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +1

Query: 121 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTR 273
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW++ + +  R
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGR 55



 Score = 33.1 bits (72), Expect = 0.031
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 204 AIQQRRSIRQDK*LDNGQDKKYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQK 374
           ++ Q +  R+ +        +++++Y +  +GA S + Y H EDES+F ++D   V +
Sbjct: 47  SVDQPKDGREQRGRQGAFAGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 583 EVHIFNRDPCWPYSYRC 533
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +1

Query: 64  LNIVNYDVGTRTAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQP 207
           LN+   D GT      P    + ++ D   G  PY  P+     PY P
Sbjct: 376 LNVKIIDFGTAFVFHYPFESTT-LMSDGVVGSKPYVAPEVLTQKPYDP 422


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 48  WFKIVT*HSELRCRNTYC 101
           W+  V  + ELRC+N YC
Sbjct: 576 WWTPVYVNQELRCKNAYC 593


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 333 HLHHGSMHKTNQPRTVMHICSGTSCLDH 250
           HLH     K  +  TV  I  G  C+DH
Sbjct: 246 HLHDSGKIKFGERYTVYSIKDGQPCMDH 273


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 374 AVPVISAWAGSRTAWSWCQGCTYSWWYDNIEQAT 475
           A  ++S WAG    + W Q  T   + DN   AT
Sbjct: 302 AKDIVSIWAGLPFVFVWLQHITAEVFIDNEHVAT 335


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 558 HVGLTVTDASRIF-IGAPVD 502
           HVG+ VTD SR+   G+P+D
Sbjct: 642 HVGIHVTDVSRVIEPGSPLD 661


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 124 ISPIIQDNPTGWGPYEMPDQFRDMPYQ 204
           + PII  NP  W PY     FR  P Q
Sbjct: 20  LPPIILTNPLTWIPYIYRYLFRKTPRQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,359
Number of Sequences: 5004
Number of extensions: 55037
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)