Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021259
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         40   0.002
10_01_0255 + 2684534-2684601,2684662-2684772,2684853-2684934,268...    29   3.6  
02_03_0279 + 17250347-17252098                                         28   4.8  
04_02_0023 + 8655524-8655653,8655742-8656475,8656553-8656918,865...    27   8.4  

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = +1

Query: 115 MRFISPIIQDNPTGWGPYEM---PDQF------RDMPYQPFSKGDRLGKISDWT 249
           M F   ++  NP GWGP +    P           +P+ PFS+ D+LG+I+DWT
Sbjct: 1   MGFDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWT 54


>10_01_0255 +
           2684534-2684601,2684662-2684772,2684853-2684934,
           2685004-2685088,2685195-2685358
          Length = 169

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 438 VHPWHHDHAVLEPAH-ADMTGTAFVL 364
           V+PW H   VL+PAH A+ T T F++
Sbjct: 31  VYPWDHLVVVLDPAHYAEKTFTEFLV 56


>02_03_0279 + 17250347-17252098
          Length = 583

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 501 PTSYQACVHVACSMLSYHQEYVHPWHHDHAVLEPAHADMTGTAFVL 364
           P S+ +C H +     YH +Y H  HH H +   A +     A V+
Sbjct: 355 PLSHGSCSHGSNHRHHYHYQYHH--HHHHIIASSAASSAATAASVV 398


>04_02_0023 +
           8655524-8655653,8655742-8656475,8656553-8656918,
           8657062-8657183,8657210-8657786
          Length = 642

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 588 RGKSISSIVTHVGLTVTDASRIFIGAPVDPTSYQACVHVACSMLSYHQEYV 436
           RGK+ +S++   G  V   ++  +G P+   +  A + +AC  L  H++Y+
Sbjct: 574 RGKAATSMLNKAGKVVRAPAQFELGMPLVEDNVLAVMGIACREL--HKQYM 622


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,563
Number of Sequences: 37544
Number of extensions: 385490
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)