Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021259
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 31 0.70
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14) 29 2.8
SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 29 2.8
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 3.7
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.9
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007) 28 4.9
SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.9
SB_35772| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 28 4.9
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 28 4.9
SB_15142| Best HMM Match : rve (HMM E-Value=1.1e-13) 28 6.5
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 27 8.6
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 27 8.6
>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 67.7 bits (158), Expect = 7e-12
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1
Query: 118 RFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKI 237
+F +P IQDNP GWGP +P F+D+PYQPFSK DRLGK+
Sbjct: 6 KFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKV 45
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/36 (55%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = +3
Query: 273 NKYASQFGAGSS-YAYFHDEDESTFHLVDTTRVQKP 377
+KY SQFG G+ ++Y+H+EDE++F LVDT+R Q+P
Sbjct: 63 DKYQSQFGTGNQMFSYYHEEDETSFQLVDTSRTQRP 98
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 518 MKIRDASVTVRPTWVTIED--MDFPR 589
M R ASVTVR W +ED +DFPR
Sbjct: 166 MHKRVASVTVREEWKVLEDGELDFPR 191
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 211 SKGDRLGKISDWTMVKTRSTRTNMHHSSGLVR 306
SKGDRL SDW V +TN+ S+GL+R
Sbjct: 595 SKGDRL---SDWVEVLRSPAKTNLAGSTGLIR 623
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = +2
Query: 353 GHYSSTKAVPVISAWAGSRTAWSWCQGCTYSWWYDNIEQAT*TQAW*EVGSTGAPMKIRD 532
GH + + S+ R + WCQGC + D+++Q Q W G +++
Sbjct: 1346 GHRLFSYVIFFCSSHLSVRGPYVWCQGCGHGGHLDHMKQWFDEQIWCPAGCGHVSLQVTT 1405
Query: 533 ASVTVRPTWVTIEDMDFP 586
T + +D+ P
Sbjct: 1406 VKYTKWNRCIRRDDLTRP 1423
>SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 661
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 118 RFISPIIQDNPTGW--GPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHS 291
R +P+ ++ P W GP + D F Y GDRL S W V + TN+ S
Sbjct: 328 RACTPLTKE-PHRWNSGPV-LADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGS 382
Query: 292 SGLVRLMHTSMMKMKAP 342
+GL+R + T P
Sbjct: 383 TGLIRHLRTFFATFGVP 399
>SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 285 MHICSGTSCLDHCPITYLA*SIAFAEWLIGHVPKLV 178
MHI + C+DHC + L+ S A + L H KL+
Sbjct: 1 MHISTSDPCVDHCSVYALSSSDAEFQVLCNHRHKLL 36
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 118 RFISPIIQDNPTGW--GPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHS 291
R +P+ ++ P W GP + D F Y GDRL S W V + TN+ S
Sbjct: 1114 RACTPLTKE-PHRWNSGPV-LADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGS 1168
Query: 292 SGLVRLMHTSMMKMKAP 342
+GL+R + T P
Sbjct: 1169 TGLIRHLRTFFATFGVP 1185
>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 285 MHICSGTSCLDHCPITYLA*SIAFAEWLIGHVPKLV 178
MHI + C+DHC + L+ S A + L H KL+
Sbjct: 343 MHISTSDPCVDHCSVYALSSSDAEFQVLCNHRHKLL 378
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 556 CWPYSYRCITNLHRCTR*PHLLPSLR---SRGLFNVVIPPG 443
C P Y C T+ RC++ +LP + ++ L NVV P G
Sbjct: 235 CCPNGYTCDTSSGRCSKGDSVLPLFKKTPAKQLKNVVCPDG 275
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 556 CWPYSYRCITNLHRCTR*PHLLPSLR 479
C PY Y+C T+ C R H+L L+
Sbjct: 70 CCPYGYKCDTSGGACIRGKHVLQLLK 95
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 556 CWPYSYRCITNLHRCTR*PHLLPSLR---SRGLFNVVIPPG 443
C P Y C T+ RC + +LP + ++ L NVV P G
Sbjct: 460 CCPNGYTCDTSSGRCNKGDSVLPLFKKTPAKQLKNVVCPGG 500
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 118 RFISPIIQDNPTGWGP-YEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSS 294
R +P+ ++ P W + D F Y GDRL S W V + TN+ S+
Sbjct: 84 RACTPLTKE-PHRWNSGHVFADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGST 139
Query: 295 GLVRLMHTSMMKMKAP 342
GL+R + T P
Sbjct: 140 GLIRHLRTFFATFGVP 155
>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
Length = 729
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 118 RFISPIIQDNPTGW--GPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHS 291
R +P+ ++ P W GP D F Y GDRL S W V + TN+ S
Sbjct: 530 RACTPLTKE-PHRWNSGPV-FADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGS 584
Query: 292 SGLVRLMHTSMMKMKAP 342
+GL+R + T P
Sbjct: 585 TGLIRHLRTFFATFGVP 601
>SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Frame = -2
Query: 441 YVHPWHHDHAVLEPAHADMTGTAFVLE*CPPGERCFHLHHGSMHKTNQP--RTVMHICSG 268
+ +PW HD PAH+ T + PP E C S T P + +
Sbjct: 132 FPYPWLHDSYAASPAHSFYYPTPTLS--TPPRELCSAYLPPSFQHTGYPHYKPALAASLS 189
Query: 267 TSCLDHCP 244
T L CP
Sbjct: 190 TRALSSCP 197
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 118 RFISPIIQDNPTGWGP-YEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSS 294
R +P+ ++ P W + D F Y GDRL S W V + TN+ S+
Sbjct: 764 RACTPLTKE-PHRWNSGHVFADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGST 819
Query: 295 GLVRLMHTSMMKMKAP 342
GL+R + T P
Sbjct: 820 GLIRHLRTFFATFGVP 835
>SB_35772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 118 RFISPIIQDNPTGWGPYEMPDQFRDMP-YQPFSKGDRLGKISDWTMVKTRSTRTNMHHSS 294
R +P+ ++ P W + F D Y GDRL S W V + TN+ S+
Sbjct: 84 RACTPLTKE-PHRWNSGPVFADFSDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGST 139
Query: 295 GLVRLMHTSMMKMKAP 342
GL+R + T P
Sbjct: 140 GLIRHLRTFFATFGVP 155
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 214 KGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAP 342
KGDRL S W V + TN+ S+GL+R + T P
Sbjct: 90 KGDRL---SGWVEVLSSPATTNLAGSTGLIRHLRTFFATFGVP 129
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 214 KGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAP 342
KGDRL S W V + TN+ S+GL+R + T P
Sbjct: 1210 KGDRL---SGWVEVLSSPATTNLAGSTGLIRHLRTFFATFGVP 1249
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 118 RFISPIIQDNPTGW--GPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHS 291
R +P+ ++ P W GP D F Y GDRL S W V + TN+ S
Sbjct: 532 RACTPLTKE-PHRWNSGPV-FADFFDYKGYHYLVVGDRL---SGWVEVLSSPATTNLAGS 586
Query: 292 SGLVRLMHTSMMKMKAP 342
+GL+R + T P
Sbjct: 587 TGLIRHLRTFFATFGVP 603
>SB_15142| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 442
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 163 PYE--MPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMK 336
P+E D F Y GDRL S W V + +TN+ S+GL+R + T
Sbjct: 266 PFEAVFADFFDYKGYHYLVVGDRL---SGWVEVLSPPAKTNLAGSTGLIRHLRTFFATFG 322
Query: 337 AP 342
P
Sbjct: 323 VP 324
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 374 AVPVISAWAGSRTAWSWCQGCTYSWWY 454
A P + A+ S AW++C +SW Y
Sbjct: 188 AQPFVHAFKESNAAWNFCPAGKWSWEY 214
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 377 VPVISAWAGSRTAWSWCQGCTYSWWY 454
+P + A+ S AW++C +SW Y
Sbjct: 410 IPFVHAFKESNAAWNFCPDGKWSWEY 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,321
Number of Sequences: 59808
Number of extensions: 439070
Number of successful extensions: 1000
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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