Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021259
         (589 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023923-1|ABB36427.1|  560|Drosophila melanogaster RH04128p pro...    77   2e-14
AF220363-1|AAF37264.1|  560|Drosophila melanogaster eukaryotic t...    77   2e-14
AE014297-3351|AAF56158.1|  560|Drosophila melanogaster CG10161-P...    77   2e-14
AY119516-1|AAM50170.1|  551|Drosophila melanogaster GH14470p pro...    62   4e-10
AE014297-1458|AAF54756.1|  551|Drosophila melanogaster CG4810-PA...    62   4e-10

>BT023923-1|ABB36427.1|  560|Drosophila melanogaster RH04128p
           protein.
          Length = 560

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 249 NGQDKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 377
           +  DKKYQNKYAS FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 59  SNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = +1

Query: 97  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRT 276
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK DRLGKI DWT       + 
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 277 NMHHSS 294
              ++S
Sbjct: 66  QNKYAS 71



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 500 GSTGAPMKIRDASVTVRPTWVTIEDMDFPR 589
           G  G P K+R++SV VR  W +IE+MDFPR
Sbjct: 155 GHRGPPPKMRESSVAVRADWASIEEMDFPR 184


>AF220363-1|AAF37264.1|  560|Drosophila melanogaster eukaryotic
           translation initiationfactor 3 p66 subunit protein.
          Length = 560

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 249 NGQDKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 377
           +  DKKYQNKYAS FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 59  SNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = +1

Query: 97  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRT 276
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK DRLGKI DWT       + 
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 277 NMHHSS 294
              ++S
Sbjct: 66  QNKYAS 71



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 500 GSTGAPMKIRDASVTVRPTWVTIEDMDFPR 589
           G  G P K+R++SV VR  W +IE+MDFPR
Sbjct: 155 GHRGPPPKMRESSVAVRADWASIEEMDFPR 184


>AE014297-3351|AAF56158.1|  560|Drosophila melanogaster CG10161-PB
           protein.
          Length = 560

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 249 NGQDKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 377
           +  DKKYQNKYAS FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 59  SNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = +1

Query: 97  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVKTRSTRT 276
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK DRLGKI DWT       + 
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 277 NMHHSS 294
              ++S
Sbjct: 66  QNKYAS 71



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 500 GSTGAPMKIRDASVTVRPTWVTIEDMDFPR 589
           G  G P K+R++SV VR  W +IE+MDFPR
Sbjct: 155 GHRGPPPKMRESSVAVRADWASIEEMDFPR 184


>AY119516-1|AAM50170.1|  551|Drosophila melanogaster GH14470p
           protein.
          Length = 551

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
 Frame = +3

Query: 258 DKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTT--RVQKPYQ 383
           +KK+ +KYAS FG  S YAYF+++D+STFHLVDTT  +  KPYQ
Sbjct: 52  EKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQ 95



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +1

Query: 121 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWT 249
           FI P ++ N  GWGP E+P+   D+PYQPF K DRLGKI DWT
Sbjct: 7   FIKPYVEYNEHGWGPCEVPEL--DVPYQPFCKSDRLGKICDWT 47



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +2

Query: 512 APMKIRDASVTVRPTWVTIEDMDFPR 589
           AP +IR++SV V+  WV+IE++DFPR
Sbjct: 158 APTRIRESSVMVQSDWVSIEEIDFPR 183


>AE014297-1458|AAF54756.1|  551|Drosophila melanogaster CG4810-PA
           protein.
          Length = 551

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
 Frame = +3

Query: 258 DKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTT--RVQKPYQ 383
           +KK+ +KYAS FG  S YAYF+++D+STFHLVDTT  +  KPYQ
Sbjct: 52  EKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQ 95



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +1

Query: 121 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWT 249
           FI P ++ N  GWGP E+P+   D+PYQPF K DRLGKI DWT
Sbjct: 7   FIKPYVEYNEHGWGPCEVPEL--DVPYQPFCKSDRLGKICDWT 47



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +2

Query: 512 APMKIRDASVTVRPTWVTIEDMDFPR 589
           AP +IR++SV V+  WV+IE++DFPR
Sbjct: 158 APTRIRESSVMVQSDWVSIEEIDFPR 183


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,892,904
Number of Sequences: 53049
Number of extensions: 639297
Number of successful extensions: 1726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)