Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021259
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    34   0.065
Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical p...    33   0.20 
U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    27   7.5  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    27   7.5  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      27   7.5  

>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 136 IQDNPTGWGPYEMPDQFRD-MPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHS 291
           + DN  GWGP        + +P+Q F+K DR+G+++DW  V     R N  ++
Sbjct: 11  LADNTVGWGPLASSSSADEPVPFQQFNKADRIGRVADWIGVDRFYRRGNERYN 63



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 234 DK*LDNGQDKKYQNKYASQFGAGSSYAYFHDEDESTFHLVDTTR 365
           D+    G ++  +  Y S   AGS + Y H  DE  F LVDT++
Sbjct: 52  DRFYRRGNERYNERVYGSAANAGSQFDYIHGMDEHNFQLVDTSK 95


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 220 DRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRT 381
           DRL    DW +V    T+T +      V  +     K K PF+  +LL YKS T
Sbjct: 61  DRLASFPDWNLVVVADTKTPLDWKLKNVHFLSVEYQK-KLPFSMSSLLPYKSYT 113


>Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical
           protein F56H6.9 protein.
          Length = 803

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 202 QPFSKGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRT 381
           QP     RL  I DW +V    T+T +      V  +  +  K + PFT  + L YKS T
Sbjct: 67  QPTEDVKRLAAIEDWNLVVVADTKTPLDWKLENVHFLSVAYQK-QLPFTLVSELPYKSYT 125


>U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical
           protein F10G7.5a protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 570 SIVTHVGLTVTDASRIFIGAPVDPTSYQACVHVACSM 460
           S++  +       SR+F GA  D TSYQ  + + CS+
Sbjct: 290 SLIGSISSIFNAGSRVFWGAIADTTSYQFSMSIVCSL 326


>U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical
           protein F10G7.5b protein.
          Length = 471

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 570 SIVTHVGLTVTDASRIFIGAPVDPTSYQACVHVACSM 460
           S++  +       SR+F GA  D TSYQ  + + CS+
Sbjct: 304 SLIGSISSIFNAGSRVFWGAIADTTSYQFSMSIVCSL 340


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 223 RLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRT 381
           RL   +DW +V    T+T +         +     K K+PF+  + L YKS T
Sbjct: 75  RLASFTDWNLVVVADTKTPLDWELENAHFLSVEFQK-KSPFSLVSSLSYKSYT 126


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 223 RLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRT 381
           RL  I DW +V    T+T +      V  +     K + PF+  T L YKS T
Sbjct: 77  RLAAIEDWNLVVVGDTKTPLDWQLENVHFLSVVYQK-QLPFSLVTELPYKSYT 128


>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 223 RLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRT 381
           RL  I DW +V    T+T +      V  +     K + PF+  T L YKS T
Sbjct: 78  RLAAIEDWNLVVVADTKTPVDWWLENVHFLSVEYQK-QLPFSLVTKLPYKSYT 129


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 190 DMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMK 330
           D+ Y  F+KGDR+  I      +      N  + +GLV L H S  +
Sbjct: 671 DLSYLQFAKGDRIEVIKMQGHNRFTGCLINNRNRTGLVHLDHVSQSR 717


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 190 DMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMK 330
           D+ Y  F+KGDR+  I      +      N  + +GLV L H S  +
Sbjct: 703 DLSYLQFAKGDRIEVIKMQGHNRFTGCLINNRNRTGLVHLDHVSQSR 749


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 190 DMPYQPFSKGDRLGKISDWTMVKTRSTRTNMHHSSGLVRLMHTSMMK 330
           D+ Y  F+KGDR+  I      +      N  + +GLV L H S  +
Sbjct: 703 DLSYLQFAKGDRIEVIKMQGHNRFTGCLINNRNRTGLVHLDHVSQSR 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,138
Number of Sequences: 27780
Number of extensions: 313821
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)