Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021259
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44320.1 68418.m05427 eukaryotic translation initiation facto...    32   0.33 
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...    32   0.33 
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu...    28   4.0  
At5g19130.2 68418.m02277 GPI transamidase component family prote...    28   5.3  
At5g15670.1 68418.m01833 F-box family protein contains F-box dom...    28   5.3  
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    27   7.0  

>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
 Frame = +1

Query: 145 NPTGWGPYEMPDQ----------FRDMPYQPFSKGDRLGKISDWT 249
           N  GWGP +  D             ++P+  FS+ ++LG+++DWT
Sbjct: 14  NSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWT 58


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 190 DMPYQPFSKGDRLGKISDWTM-VKTRSTRTN 279
           ++P+  FS+ D+LG+++DWT  +   S R N
Sbjct: 43  NVPFASFSRSDKLGRVADWTRNLSNPSARPN 73


>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase,
           chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
           kDa thylakoid lumen rotamase) [Spinacia oleracea]
           SWISS-PROT:O49939
          Length = 437

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 115 MRFISPIIQDNPTGWGPYEMPDQFRDMP 198
           ++++  I +D   G+ PYE+P+++R+MP
Sbjct: 207 LKYVGGIEEDMVDGF-PYEVPEEYRNMP 233


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 252 GQDKKYQNKYASQFGAGSSYAYFHDEDESTFH 347
           GQ +K   KY S  GA  SY  FH E  + FH
Sbjct: 102 GQVQKLIGKYMSDMGAEVSYQKFHPEG-NQFH 132


>At5g15670.1 68418.m01833 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 214

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 120 PHRPSAGSTCSDIVVHYV 67
           PHRP +   C D VV+YV
Sbjct: 161 PHRPCSNGVCIDSVVYYV 178


>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 576 ISSIVTHVGLTVTDASRIFIGAPVDPTSYQAC---VHVACSMLSYHQEYV-HPWHHDHAV 409
           +S +  H GL      R+     VD  S   C   +HVAC+ +   QE V HP H  H++
Sbjct: 15  VSRVKHHDGLECDACDRL----NVDGYSCSECKFNIHVACTFVFDKQEIVDHPSHDGHSL 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,959
Number of Sequences: 28952
Number of extensions: 296121
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)