Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021258
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    28   1.0  
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    27   1.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.0  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   5.3  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   7.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.3  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.3  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 396 TVSQCRHAPLLYACLNSERHVSEQNSFLPFSVGRTYFNGVLLSAHHVQYVSEVYQD 229
           +V +  H    +A + SE H+  +    P SV   Y N  L+ AH + ++  +  D
Sbjct: 185 SVKRSPHGVSWFATICSETHIENEWHVGPLSVVSAYPNDRLVVAHEIGHILGLIHD 240


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 232 GPRILPGAGPDEPTVLFDIVLL 167
           GPR  PG  P   T+LFD+ LL
Sbjct: 84  GPRGFPGLIPPNSTLLFDVELL 105


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 260 WCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGN 409
           W   ++  L    P+ N +  FC   C S +R+ Y    C++   + + N
Sbjct: 151 WTLMNEIALMPSPPSRNEQPAFCVNWCPSRWREQYIAVGCMNDAYIYKQN 200


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 546 GSFYCIYQPFDWTEYMKETNSVPAPQECF 632
           G  Y +  PFDWT Y     ++  P   F
Sbjct: 93  GEEYPVIYPFDWTYYTDYQGTIQRPNAKF 121


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 417 EGTLPRITVSQCRHAPLLYACLNSERHVSEQNSFLPFSVGRTYFNGVL 274
           + + PRI +S   H PL    +NS   + E++  + + +G  Y N +L
Sbjct: 206 DNSRPRILLS---HVPLFRPAINSCGELREKDDVIKYGLGYQYQNLLL 250


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 481 TFFIFLLINVQTMRRAEIFAARRYITAYNCV 389
           +F I   +NVQTM    I   R +IT+++ V
Sbjct: 418 SFCIDWHLNVQTMSERSILTNRDFITSFSAV 448


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 224 TWSWYTSETYCTWCAESKTPLKYVL 298
           T  WY +E +C W +E+    K+ L
Sbjct: 131 TSHWYYNEKFCCWYSETMGMFKHDL 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,977
Number of Sequences: 5004
Number of extensions: 51280
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)