Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021258
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525... 32 0.34
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 29 2.4
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 2.4
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 29 3.2
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 28 7.3
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 7.3
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 28 7.3
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320... 27 9.7
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 27 9.7
>06_03_0931 -
26052135-26052176,26052273-26052377,26052489-26052584,
26052686-26052757,26052879-26052974,26053054-26053155,
26053258-26053347,26053452-26053535,26053623-26053697,
26053847-26053930,26054012-26054242
Length = 358
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 234 QDHVFCRELAPTSRQYYSTLFYCNFQRII 148
Q HV R LAPT ++TLF C F +I
Sbjct: 222 QQHVLKRPLAPTKSVVFATLFMCCFSSVI 250
>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 227 WSWYTSETYCTWCAESKT-PLKYVL--PTENGKKEFCSETCLSEFRQAYSKGACLHCDTV 397
WS Y E +C + T L+ +L PTE+ ++ F S E + +HCDT
Sbjct: 278 WSGYDCERIYKFCLDDMTISLQPILAHPTEDLRRGFWSVPAGIEATELVQSAPSIHCDTE 337
Query: 398 I 400
+
Sbjct: 338 V 338
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = -2
Query: 288 FNGVLLSAHHVQYVSEVYQDHVFCRELAPTSRQYYSTLFYCNFQRIIKHILT 133
F L+ + + ++ ++ + H+FC E + ++ + Y N Q + H +T
Sbjct: 244 FLQALIGSVPLAHIEDICEAHIFCAEQPSIAGRFLCAVGYPNMQDYVDHFVT 295
>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 321 SFLPFSVGRTYFNGVLLSAHHVQYVSEVYQDHVFCRELA-PTSRQYYSTLFYCNFQRII 148
SFL G + FN V L A++V Y S V ++L+ T Q L YC R++
Sbjct: 829 SFLSGIAGTSLFNSVSLMAYNVFYTSIPVLTTVLDKDLSEKTVMQNPEILLYCQAGRLL 887
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 378 HAPLLYACLNSERHVSEQNSFLPFSV 301
+ P++Y C N+ HV SFL ++
Sbjct: 105 YTPVVYQCYNTSDHVDSSTSFLQLNI 130
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 248 TYCTWCAESKTPLKYVLPTENGKKEFCS 331
T+CT C ES + NG K FC+
Sbjct: 1398 TFCTNCGESSDATPMMRHAPNGTKSFCN 1425
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 369 LLYACLNSERHVSEQNSFLPFSVGRTYFNGVLLSAH-HVQYVSEVYQDHVFCREL 208
LL NSE+ + N L F + + G+L S+H H +H++ +E+
Sbjct: 113 LLEMNTNSEKLLQTYNELLEFKMVLSKAGGILASSHNHAAPAERELDEHIYDKEM 167
>07_03_1775 +
29431106-29431193,29431290-29431329,29431620-29432080,
29432173-29432363,29432503-29432635,29432839-29433428
Length = 500
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 330 PKHVSQSSDRRTAKARVYIVTQLYAVMYLRAAKISALR 443
P+H ++ TA + V++V + +V+Y RA K+ +R
Sbjct: 143 PRHSWRNYGLVTAGSAVFLVMTIASVIYCRAKKVGTVR 180
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 215 GSWPRRADSIIRHC 174
G W R+ADS +RHC
Sbjct: 320 GLWKRKADSTLRHC 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,892
Number of Sequences: 37544
Number of extensions: 291132
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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