Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021258
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         35   0.049
SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)                30   1.4  
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                     28   7.5  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         27   9.9  
SB_38728| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-07)                 27   9.9  
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)                27   9.9  

>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 573 FDWTEYMKETNSVPAPQECFKQ 638
           F W EY+K+TNS+ AP E FK+
Sbjct: 629 FQWEEYLKKTNSLAAPPELFKK 650


>SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 879

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/82 (24%), Positives = 32/82 (39%)
 Frame = +2

Query: 203 GASSRQNTWSWYTSETYCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACL 382
           G  S Q   SW  S+      + +++ +++           CSETC + FRQ  +   C 
Sbjct: 454 GPFSVQIVGSWRQSDLKPALFSVNQSRMRWNNERNQIPASVCSETCQAGFRQTKTVACCW 513

Query: 383 HCDTVIRGNVPSSSKNFCSTHC 448
            C     G + S   +   T C
Sbjct: 514 ECLPCQTGYINSVPGSLNCTKC 535


>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 567 QPFDWTEYMKETNSVPAPQECFKQ 638
           + F W EY+ +T  + AP   FKQ
Sbjct: 464 ETFSWPEYLDKTGGIEAPVHLFKQ 487


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 377  CLHCDTVIRGNVPSSSKNFCSTHCLNIYQKKNEKRTTSPQSGNGQTELK 523
            C     +I+  +P+S ++ C  HC +  Q    + + S +  + QTE++
Sbjct: 1012 CEEPKVIIQKELPTSPESTCDKHCCHFVQSSLPQTSGSVECMDVQTEIE 1060


>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 194 RLVGASSRQNTWSWYTSETYCTWCAESKTPLKY 292
           R++  +S  +  +  T++ Y TW   SKTP+KY
Sbjct: 71  RIIQTASSIDYRNPLTTDQYFTWLIMSKTPVKY 103


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/77 (25%), Positives = 28/77 (36%)
 Frame = +2

Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKNF 433
           C W   + + LK  L T  G+K +  E C     +A+S    L     I  N+   S   
Sbjct: 354 CEWSFTTSSDLKRHLKTHTGEKPYRCEEC----DKAFSSSCGLSTHKKIHFNIKPHSCTV 409

Query: 434 CSTHCLNIYQKKNEKRT 484
           C        Q  +  RT
Sbjct: 410 CHKRFATTGQVTSHMRT 426


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 555 YCIYQPFDWTEYMKETNSVPAPQECFKQ 638
           Y   +PF W +Y+  + + P P   F+Q
Sbjct: 463 YNFSKPFTWADYLYTSGAKPVPVSTFRQ 490


>SB_38728| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-07)
          Length = 401

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -2

Query: 321 SFLPFSVGRTYFNGVLLSAHHVQYVSEVYQDHVFCRELAPTSRQYYSTLFYCN 163
           S L F+ G TY    + +   +QY +  +   ++ ++     R Y   L  CN
Sbjct: 253 SLLSFAAGVTYTANAIFAVKLLQYSNSFFNPILYAQKFPEFRRAYVRMLCRCN 305


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 215  RQNTWSWYTSETYCTWCAESKTPLKYVLPTENGKKEFCSET 337
            R  T   + S T C WC +    +K   P ++ K   C +T
Sbjct: 968  RPTTPGSHNSSTSCHWCGKKADHVKKDCPAKDAKCRNCGKT 1008


>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
          Length = 426

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 215 RQNTWSWYTSETYCTWCAESKTPLKYVLPTENGKKEFCSET 337
           R  T   + S T C WC +    +K   P ++ K   C +T
Sbjct: 240 RPTTPGSHNSSTSCHWCGKKADHVKKDCPAKDAKCRNCGKT 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,933
Number of Sequences: 59808
Number of extensions: 376195
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)