Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021258
(646 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49793-1|AAB57632.1| 877|Drosophila melanogaster transcriptiona... 118 5e-27
BT001565-1|AAN71320.1| 877|Drosophila melanogaster RE16782p pro... 118 5e-27
AE014297-993|AAF54419.2| 877|Drosophila melanogaster CG9495-PA ... 118 5e-27
AY051494-1|AAK92918.1| 818|Drosophila melanogaster GH14774p pro... 32 0.58
AF313621-1|AAL78208.1| 818|Drosophila melanogaster CTCF protein. 32 0.58
AE014296-1240|AAF50573.2| 818|Drosophila melanogaster CG8591-PA... 32 0.58
BT015235-1|AAT94464.1| 1688|Drosophila melanogaster RE05635p pro... 32 0.77
AY058710-1|AAL13939.1| 1043|Drosophila melanogaster LD44304p pro... 32 0.77
AJ276394-1|CAC01697.1| 1688|Drosophila melanogaster WOC protein ... 32 0.77
AE014297-4103|AAF56688.2| 1688|Drosophila melanogaster CG5965-PA... 32 0.77
DQ655701-1|ABG45861.1| 813|Drosophila melanogaster JXC1 protein. 31 1.8
AY058444-1|AAL13673.1| 813|Drosophila melanogaster GH22790p pro... 31 1.8
AE013599-1347|AAF58619.2| 813|Drosophila melanogaster CG8991-PA... 31 1.8
BT016025-1|AAV36910.1| 980|Drosophila melanogaster RE10692p pro... 29 5.4
AE013599-3237|AAF46740.2| 1544|Drosophila melanogaster CG10080-P... 29 5.4
AF145673-1|AAD38648.1| 950|Drosophila melanogaster BcDNA.GH1219... 29 7.1
AE013599-1030|AAF58840.1| 950|Drosophila melanogaster CG4001-PA... 29 7.1
BT022484-1|AAY54900.1| 489|Drosophila melanogaster IP11785p pro... 28 9.4
AY071707-1|AAL49329.1| 1026|Drosophila melanogaster RH22885p pro... 28 9.4
AE014298-2268|AAS65365.1| 1026|Drosophila melanogaster CG16952-P... 28 9.4
AE014298-2267|AAS65364.1| 1026|Drosophila melanogaster CG16952-P... 28 9.4
AE014298-2266|AAF48532.2| 1026|Drosophila melanogaster CG16952-P... 28 9.4
AE013599-140|AAF57285.3| 477|Drosophila melanogaster CG14593-PA... 28 9.4
>U49793-1|AAB57632.1| 877|Drosophila melanogaster transcriptional
repressor protein protein.
Length = 877
Score = 118 bits (285), Expect = 5e-27
Identities = 52/86 (60%), Positives = 62/86 (72%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKNF 433
CTWC E K PL+YVLPT+ GKKEFCSETC++EFR+AYSKGAC CD VIR P +K F
Sbjct: 63 CTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAP--NKEF 120
Query: 434 CSTHCLNIYQKKNEKRTTSPQSGNGQ 511
CS C+N +QKKN S S +G+
Sbjct: 121 CSIMCMNKHQKKNCSTRHSGGSASGK 146
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 ETDKRXXXXXXXXXTGSF-YCIYQPFDWTEYMKETNSVPAPQECFKQA 641
E++++ TG F Y + FDW Y++ET S AP +CFKQA
Sbjct: 150 ESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQA 197
>BT001565-1|AAN71320.1| 877|Drosophila melanogaster RE16782p
protein.
Length = 877
Score = 118 bits (285), Expect = 5e-27
Identities = 52/86 (60%), Positives = 62/86 (72%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKNF 433
CTWC E K PL+YVLPT+ GKKEFCSETC++EFR+AYSKGAC CD VIR P +K F
Sbjct: 63 CTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAP--NKEF 120
Query: 434 CSTHCLNIYQKKNEKRTTSPQSGNGQ 511
CS C+N +QKKN S S +G+
Sbjct: 121 CSIMCMNKHQKKNCSTRHSGGSASGK 146
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 ETDKRXXXXXXXXXTGSF-YCIYQPFDWTEYMKETNSVPAPQECFKQA 641
E++++ TG F Y + FDW Y++ET S AP +CFKQA
Sbjct: 150 ESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQA 197
>AE014297-993|AAF54419.2| 877|Drosophila melanogaster CG9495-PA
protein.
Length = 877
Score = 118 bits (285), Expect = 5e-27
Identities = 52/86 (60%), Positives = 62/86 (72%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKNF 433
CTWC E K PL+YVLPT+ GKKEFCSETC++EFR+AYSKGAC CD VIR P +K F
Sbjct: 63 CTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAP--NKEF 120
Query: 434 CSTHCLNIYQKKNEKRTTSPQSGNGQ 511
CS C+N +QKKN S S +G+
Sbjct: 121 CSIMCMNKHQKKNCSTRHSGGSASGK 146
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 ETDKRXXXXXXXXXTGSF-YCIYQPFDWTEYMKETNSVPAPQECFKQA 641
E++++ TG F Y + FDW Y++ET S AP +CFKQA
Sbjct: 150 ESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQA 197
>AY051494-1|AAK92918.1| 818|Drosophila melanogaster GH14774p
protein.
Length = 818
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 251 YCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKN 430
+CT+ ++ LK + G+K++ + C S F Q+ S A +V+ + P N
Sbjct: 411 HCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVV--DKPVFQCN 468
Query: 431 FCSTHC 448
+C T C
Sbjct: 469 YCPTTC 474
>AF313621-1|AAL78208.1| 818|Drosophila melanogaster CTCF protein.
Length = 818
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 251 YCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKN 430
+CT+ ++ LK + G+K++ + C S F Q+ S A +V+ + P N
Sbjct: 411 HCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVV--DKPVFQCN 468
Query: 431 FCSTHC 448
+C T C
Sbjct: 469 YCPTTC 474
>AE014296-1240|AAF50573.2| 818|Drosophila melanogaster CG8591-PA
protein.
Length = 818
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 251 YCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSKN 430
+CT+ ++ LK + G+K++ + C S F Q+ S A +V+ + P N
Sbjct: 411 HCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVV--DKPVFQCN 468
Query: 431 FCSTHC 448
+C T C
Sbjct: 469 YCPTTC 474
>BT015235-1|AAT94464.1| 1688|Drosophila melanogaster RE05635p
protein.
Length = 1688
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTVIRG------- 406
C C K P++ + E+ + FCS C S F+ + A C C
Sbjct: 762 CGVCNNQK-PVRVEMLLEDREHYFCSNPCFSAFKFVSNVNADPCAMCSKYFERRSAESYT 820
Query: 407 --NVPSSSKNFCSTHCLNIY 460
N S K FCS C+N+Y
Sbjct: 821 IYNEQQSPKVFCSRVCINVY 840
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 248 TYCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSK 427
T C C+ TP ++ ++ + FC+ C+ +F+ +++ A L D+ + + SSK
Sbjct: 897 TKCDNCSNFNTPQYHLTMSDASMRNFCTYQCVMQFQNQFAR-APLTLDSDLPPSSAGSSK 955
Query: 428 N 430
+
Sbjct: 956 S 956
>AY058710-1|AAL13939.1| 1043|Drosophila melanogaster LD44304p
protein.
Length = 1043
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTVIRG------- 406
C C K P++ + E+ + FCS C S F+ + A C C
Sbjct: 117 CGVCNNQK-PVRVEMLLEDREHYFCSNPCFSAFKFVSNVNADPCAMCSKYFERRSAESYT 175
Query: 407 --NVPSSSKNFCSTHCLNIY 460
N S K FCS C+N+Y
Sbjct: 176 IYNEQQSPKVFCSRVCINVY 195
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 248 TYCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSK 427
T C C+ TP ++ ++ + FC+ C+ +F+ +++ A L D+ + + SSK
Sbjct: 252 TKCDNCSNFNTPQYHLTMSDASMRNFCTYQCVMQFQNQFAR-APLTLDSDLPPSSAGSSK 310
Query: 428 N 430
+
Sbjct: 311 S 311
>AJ276394-1|CAC01697.1| 1688|Drosophila melanogaster WOC protein
protein.
Length = 1688
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTVIRG------- 406
C C K P++ + E+ + FCS C S F+ + A C C
Sbjct: 762 CGVCNNQK-PVRVEMLLEDREHYFCSNPCFSAFKFVSNVNADPCAMCSKYFERRSAESYT 820
Query: 407 --NVPSSSKNFCSTHCLNIY 460
N S K FCS C+N+Y
Sbjct: 821 IYNEQQSPKVFCSRVCINVY 840
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 248 TYCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSK 427
T C C+ TP ++ ++ + FC+ C+ +F+ +++ A L D+ + + SSK
Sbjct: 897 TKCDNCSNFNTPQYHLTMSDASMRNFCTYQCVMQFQNQFAR-APLTLDSDLPPSSAGSSK 955
Query: 428 N 430
+
Sbjct: 956 S 956
>AE014297-4103|AAF56688.2| 1688|Drosophila melanogaster CG5965-PA
protein.
Length = 1688
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTVIRG------- 406
C C K P++ + E+ + FCS C S F+ + A C C
Sbjct: 762 CGVCNNQK-PVRVEMLLEDREHYFCSNPCFSAFKFVSNVNADPCAMCSKYFERRSAESYT 820
Query: 407 --NVPSSSKNFCSTHCLNIY 460
N S K FCS C+N+Y
Sbjct: 821 IYNEQQSPKVFCSRVCINVY 840
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 248 TYCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSK 427
T C C+ TP ++ ++ + FC+ C+ +F+ +++ A L D+ + + SSK
Sbjct: 897 TKCDNCSNFNTPQYHLTMSDASMRNFCTYQCVMQFQNQFAR-APLTLDSDLPPSSAGSSK 955
Query: 428 N 430
+
Sbjct: 956 S 956
>DQ655701-1|ABG45861.1| 813|Drosophila melanogaster JXC1 protein.
Length = 813
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTV------IRGN 409
C WC T +CSE+C ++ R+A K A C C V +
Sbjct: 236 CCWCHRPIAENAPDYLTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQ 295
Query: 410 VPSSSKNFCSTHCLNIYQ 463
+S FCS CLN Y+
Sbjct: 296 DGASQLQFCSEKCLNQYK 313
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKK-EFCSETCLSEFR-QAYSKGACLHCD 391
C WC + + YV + + +FCSE CL++++ Q + H D
Sbjct: 279 CDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCHETQAHLD 326
>AY058444-1|AAL13673.1| 813|Drosophila melanogaster GH22790p
protein.
Length = 813
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTV------IRGN 409
C WC T +CSE+C ++ R+A K A C C V +
Sbjct: 236 CCWCHRPIAENAPDYLTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQ 295
Query: 410 VPSSSKNFCSTHCLNIYQ 463
+S FCS CLN Y+
Sbjct: 296 DGASQLQFCSEKCLNQYK 313
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKK-EFCSETCLSEFR-QAYSKGACLHCD 391
C WC + + YV + + +FCSE CL++++ Q + H D
Sbjct: 279 CDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCHETQAHLD 326
>AE013599-1347|AAF58619.2| 813|Drosophila melanogaster CG8991-PA
protein.
Length = 813
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGA--CLHCDTV------IRGN 409
C WC T +CSE+C ++ R+A K A C C V +
Sbjct: 236 CCWCHRPIAENAPDYLTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQ 295
Query: 410 VPSSSKNFCSTHCLNIYQ 463
+S FCS CLN Y+
Sbjct: 296 DGASQLQFCSEKCLNQYK 313
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 254 CTWCAESKTPLKYVLPTENGKK-EFCSETCLSEFR-QAYSKGACLHCD 391
C WC + + YV + + +FCSE CL++++ Q + H D
Sbjct: 279 CDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCHETQAHLD 326
>BT016025-1|AAV36910.1| 980|Drosophila melanogaster RE10692p
protein.
Length = 980
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 31 CLYLSLFKYLFRRNSDYGIKILRKIQ*ISSSLTESENVFNYALKVTIKQCRIILSARRG 207
C Y L K LFR+++ G K+L + + +NV +L++ I CR+IL G
Sbjct: 169 CQYGLLLKLLFRKDTFMG-KLLNDY--LRENYFSRQNVSRSSLELNILACRLILEIMPG 224
>AE013599-3237|AAF46740.2| 1544|Drosophila melanogaster CG10080-PA
protein.
Length = 1544
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 31 CLYLSLFKYLFRRNSDYGIKILRKIQ*ISSSLTESENVFNYALKVTIKQCRIILSARRG 207
C Y L K LFR+++ G K+L + + +NV +L++ I CR+IL G
Sbjct: 169 CQYGLLLKLLFRKDTFMG-KLLNDY--LRENYFSRQNVSRSSLELNILACRLILEIMPG 224
>AF145673-1|AAD38648.1| 950|Drosophila melanogaster BcDNA.GH12192
protein.
Length = 950
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 380 LHCDTVIRGNVPSSSKNFCSTHCLNIYQKKNEKRTTSPQSGNGQTE 517
L C I GN S K C HC+ + +++ SP N Q +
Sbjct: 65 LCCPRDISGNTLLSVKFNCKRHCIKLRSDSGDQKNDSPGEKNIQKD 110
>AE013599-1030|AAF58840.1| 950|Drosophila melanogaster CG4001-PA,
isoform A protein.
Length = 950
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 380 LHCDTVIRGNVPSSSKNFCSTHCLNIYQKKNEKRTTSPQSGNGQTE 517
L C I GN S K C HC+ + +++ SP N Q +
Sbjct: 65 LCCPRDISGNTLLSVKFNCKRHCIKLRSDSGDQKNDSPGEKNIQKD 110
>BT022484-1|AAY54900.1| 489|Drosophila melanogaster IP11785p
protein.
Length = 489
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 369 KARVYIVTQLYAVMYLRAAKISALRIV*TFIRRKMKNVPHHHSL 500
+ YIVT LY ++++ + ++ F R M+N+P+ + L
Sbjct: 66 RPETYIVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYIL 109
>AY071707-1|AAL49329.1| 1026|Drosophila melanogaster RH22885p
protein.
Length = 1026
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 362 YSKGACLHCDTVIRGNVPSSSKNFCSTHCL 451
Y K C CD V RG + S + S C+
Sbjct: 162 YEKNLCTDCDLVFRGTIFSVHRAILSARCV 191
>AE014298-2268|AAS65365.1| 1026|Drosophila melanogaster CG16952-PC,
isoform C protein.
Length = 1026
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 362 YSKGACLHCDTVIRGNVPSSSKNFCSTHCL 451
Y K C CD V RG + S + S C+
Sbjct: 162 YEKNLCTDCDLVFRGTIFSVHRAILSARCV 191
>AE014298-2267|AAS65364.1| 1026|Drosophila melanogaster CG16952-PB,
isoform B protein.
Length = 1026
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 362 YSKGACLHCDTVIRGNVPSSSKNFCSTHCL 451
Y K C CD V RG + S + S C+
Sbjct: 162 YEKNLCTDCDLVFRGTIFSVHRAILSARCV 191
>AE014298-2266|AAF48532.2| 1026|Drosophila melanogaster CG16952-PA,
isoform A protein.
Length = 1026
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 362 YSKGACLHCDTVIRGNVPSSSKNFCSTHCL 451
Y K C CD V RG + S + S C+
Sbjct: 162 YEKNLCTDCDLVFRGTIFSVHRAILSARCV 191
>AE013599-140|AAF57285.3| 477|Drosophila melanogaster CG14593-PA
protein.
Length = 477
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 369 KARVYIVTQLYAVMYLRAAKISALRIV*TFIRRKMKNVPHHHSL 500
+ YIVT LY ++++ + ++ F R M+N+P+ + L
Sbjct: 66 RPETYIVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYIL 109
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,008,793
Number of Sequences: 53049
Number of extensions: 542642
Number of successful extensions: 1822
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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