Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021258
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-7|AAG24077.2|  285|Caenorhabditis elegans Hypothetical ...    35   0.057
AF078157-6|AAQ62458.1|  406|Caenorhabditis elegans Hypothetical ...    35   0.057
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AF078157-7|AAG24077.2|  285|Caenorhabditis elegans Hypothetical
           protein F25E5.6a protein.
          Length = 285

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 SRQNTWSWYTSETYCTWCAESKTPLKYVLPTENGKKEFCSETCLSE-FRQAYSKGAC 379
           S+++T+  +   T C+ C +  T   Y +P+ NG K F    C+SE   Q    G C
Sbjct: 2   SKESTFQRHPRPTECSVCGKKATGYHYDVPSCNGCKTFFRRICISEKTMQCQGVGDC 58


>AF078157-6|AAQ62458.1|  406|Caenorhabditis elegans Hypothetical
           protein F25E5.6b protein.
          Length = 406

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 SRQNTWSWYTSETYCTWCAESKTPLKYVLPTENGKKEFCSETCLSE-FRQAYSKGAC 379
           S+++T+  +   T C+ C +  T   Y +P+ NG K F    C+SE   Q    G C
Sbjct: 2   SKESTFQRHPRPTECSVCGKKATGYHYDVPSCNGCKTFFRRICISEKTMQCQGVGDC 58


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 251 YCTWCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGNVPSSSK- 427
           +CT+   SK  L    PT++  K+ C+ T +  F    +     HC   + G++ ++ K 
Sbjct: 341 FCTF-VRSKNQLD---PTKSTVKKSCATTSILSFPDNSAYTNINHCQYKMAGSIQTAIKA 396

Query: 428 ---NFCSTHCLNI 457
              +FC+T C +I
Sbjct: 397 CNTSFCNTACSDI 409


>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -2

Query: 198 SRQYYSTLFYCNFQRIIKHILTFCQ*T*NLLYFSQYFNAVITITTEKILK*AQI*TTSDS 19
           S + Y +LF     +I+ +IL   + T  +LY  +YF+    I  E I+K A     SD 
Sbjct: 501 SIKIYLSLFNAQKMKILVNILILIRITSGMLYDGKYFDMKDRIRAECIIKKAM----SDY 556

Query: 18  RYFG 7
           +Y G
Sbjct: 557 KYLG 560


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -1

Query: 619 GAGTLFVSFMYSVQSKGW*IQ*NEPVELLLELFQFRLSVSRLW*CGTFFIFLLINVQTM- 443
           G G + + F + +  KG   Q   P E LL+  +FR+  +  W    FF+   + V+ M 
Sbjct: 313 GPGIVHMLFDFGIWGKGVVFQTVTPEEALLQRVRFRIFSNIPW----FFVKFFMTVEAMQ 368

Query: 442 --RRAEIFAARRYI 407
             R   I++ ++YI
Sbjct: 369 FERDVFIWSNKKYI 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,735
Number of Sequences: 27780
Number of extensions: 299358
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)