Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021258
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    32   0.37 
At3g50720.1 68416.m05549 protein kinase, putative similar to pro...    28   4.6  
At4g33030.1 68417.m04699 UDP-sulfoquinovose synthase / sulfite:U...    27   8.1  
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138...    27   8.1  

>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from {Mus musculus} SP|P70704, {Bos
            taurus} SP|Q29449; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1107

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 321  SFLPFSVGRTYFNGVLLSAHHVQYVSEVYQDHVFCRELAPTS-RQYYSTLFYCNFQRII 148
            SF+    G + FN V L A++V Y S      V  ++L+  S  Q+   LFYC   R++
Sbjct: 828  SFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVIDKDLSEASVMQHPQILFYCQAGRLL 886


>At3g50720.1 68416.m05549 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 377

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 254 CTWCAESKTPLKY---VLPTENGKKEFCSETCLSE 349
           C W A+SKT L++    +  E+  K FCSE   +E
Sbjct: 288 CCWAADSKTRLEFKDITISLESLLKRFCSERSNNE 322


>At4g33030.1 68417.m04699 UDP-sulfoquinovose synthase /
           sulfite:UDP-glucose sulfotransferase / sulfolipid
           biosynthesis protein (SQD1) identical to gi:2736155
          Length = 477

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 333 SEQNSFLPFSVGRTYFNGVLLS 268
           S +NS  PF  G+T+FN  LLS
Sbjct: 19  SSKNSVKPFVSGQTFFNAQLLS 40


>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.; expression supported by MPSS
          Length = 590

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 306 KMVKKSFAPKHVSQSSDRRTAKARVYIVTQLYAVMYLRAAKISALRIV*TFIRRKMKNVP 485
           K   K    K +   +D+RTAK  + ++  L     +    +S L     ++RR +   P
Sbjct: 45  KQTIKRCKRKRIQACNDQRTAKTAIGVMAILGFFCLVNWFMLSRLHEGRVWLRRGLSENP 104

Query: 486 HHHSLETDKR 515
            H S + ++R
Sbjct: 105 KHVSAQNEER 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,624
Number of Sequences: 28952
Number of extensions: 252975
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)