Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021257
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    32   0.12 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   4.4  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   5.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.8  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 321 EPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGKSDPTKSPSCELGGPGSLKS--ERLSSD 494
           +P S   G+   +D+ + G      G + +D  S   K+PS  +G PG L      +SS 
Sbjct: 99  QPDSLDGGKKLVADMYIGG-----KGTLTNDLASFREKNPSVVIGTPGRLNEMLSHISSK 153

Query: 495 SNDILIHRQASEARQIIFRMETQTVVIQM 581
             +ILI  +A     + F+   Q+++ Q+
Sbjct: 154 HLEILILDEADTLIDMGFQRTLQSIISQL 182


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 505 MSFESEDSLSDFNEPGPPSSQEGDFVG-SLLPSLSMRPSISVLMPS 371
           MSF    +L  FN+P  PS     F+    +PS    P  S++  S
Sbjct: 322 MSFSESLNLPTFNQPSGPSDVSASFLNLQAMPSPHASPKDSLINKS 367


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 14  NADRKNFIKIWFL*YDETYINVIKHSVLCHQV 109
           +AD    IK+W L     +++ +KHS + + +
Sbjct: 546 SADESGIIKVWDLRSSNQHVSFVKHSSIVYSL 577


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 14   NADRKNFIKIWFL*YDETYINVIKHSVLCHQVQ 112
            N  R  F K WFL Y      +     LCH+++
Sbjct: 1728 NKSRNVFCKEWFLRYPSQITLLSLRCTLCHEIE 1760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,409
Number of Sequences: 5004
Number of extensions: 70510
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)