Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021257
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478...    29   3.5  
11_01_0307 + 2304500-2306023                                           29   4.6  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    28   8.1  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    28   8.1  
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    28   8.1  
06_01_0290 + 2122758-2123015,2123128-2123544                           28   8.1  
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004...    28   8.1  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    28   8.1  
02_01_0682 + 5064127-5065170,5066234-5066317                           28   8.1  
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425...    28   8.1  

>04_04_1398 -
           33245268-33245876,33247516-33247608,33247639-33247827,
           33248146-33248496
          Length = 413

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 432 KSPSC-ELGGPGSLKSERLSSDSNDILIHRQASEAR 536
           K PS  E G  GS    R  SDS+D  +HR A ++R
Sbjct: 285 KRPSATESGTSGSSSKSRTCSDSSDEALHRLADDSR 320


>11_01_0307 + 2304500-2306023
          Length = 507

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -2

Query: 318 SSHDACLLVLSSAPPEWAATPRRTGTVAR---LSRVTGLVL 205
           +S D  ++ L+S+ P W ATP R G  +R   L+  TGLVL
Sbjct: 77  ASLDLAVVHLASSFPVWRATPARVGDWSRPATLTFDTGLVL 117


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 312 VKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGKSDPTK 434
           V+I+P      E + + +G+DG + EI   +  +G+S PT+
Sbjct: 104 VEIDPRLPALYEAAKNLVGIDGPREEISRWLTEEGQSGPTQ 144


>09_06_0048 +
           20477076-20478547,20478643-20478722,20478880-20478893,
           20480164-20481199,20481275-20481402,20481673-20481732,
           20481774-20481878,20481971-20482055,20482315-20482470,
           20482562-20482831,20482877-20483671,20483844-20483903,
           20484062-20485134
          Length = 1777

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 315 KIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGKSD 425
           K E  + P+G +SA + G+        G  D DGK+D
Sbjct: 362 KAEKEAAPAGNNSADEEGMQMDAVTTTGAEDEDGKAD 398


>07_01_1146 +
           10756897-10757065,10763869-10765521,10765638-10765900,
           10766057-10766266,10766818-10767036,10767379-10768344,
           10768575-10768670,10768772-10768870,10769349-10769538,
           10769623-10769855
          Length = 1365

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 354 ASDLGVDGIKTEIDGLMDSDGKSDPTKSPSCELGG-----PGSLKSERLSS-DSNDILI 512
           ASD+ ++ +   I      D   DPTK PS  LGG     P  LKSE  SS D ND  I
Sbjct: 187 ASDVDLEDLGLNIFW-KKGDKHPDPTKLPSYTLGGGICTFPDFLKSEIKSSIDFNDASI 244


>06_01_0290 + 2122758-2123015,2123128-2123544
          Length = 224

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 414 GKSDPTKSPSCELGGPGSLKSERLSSDSNDIL 509
           G  D      C++GG G+ K  RLS D   +L
Sbjct: 43  GSGDEVDDAGCDVGGGGARKKLRLSKDQAAVL 74


>04_04_0824 -
           28399144-28399385,28400193-28400312,28400422-28400453,
           28400531-28400625,28400713-28400786,28400883-28401018,
           28401096-28401333,28401508-28401555,28401593-28401780,
           28401862-28401983,28402061-28402226,28402321-28402443,
           28403068-28403139,28403244-28403351,28404212-28404328,
           28404458-28404596,28404702-28404808,28404904-28405013,
           28405141-28405274,28405348-28405497,28405571-28405791,
           28405868-28406677,28410261-28410473
          Length = 1254

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 166 MIKEKEKGGGARLKDEPSDPAEPGHGS 246
           M+K+K  G G+  +     P  PGHGS
Sbjct: 82  MVKKKRTGSGSTGESSGEAPGAPGHGS 108


>02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008,
            16549421-16553036
          Length = 1249

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 593  CYLGHLDYDSLGFHPEDYLSSF*G-LSVDQNVV 498
            C+LGH+ Y+SLG    D L S  G L    NVV
Sbjct: 996  CHLGHILYESLGEEYPDVLGSILGALKAIVNVV 1028


>02_01_0682 + 5064127-5065170,5066234-5066317
          Length = 375

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 610 GGRWRAYGSGVSMGPMSASE--AQTLPSNVMSKQSGS 714
           GG+ R  G+G+SM P  AS+   ++LP   +S++  S
Sbjct: 236 GGQVREAGAGMSMRPSRASQLVVESLPEATLSEEEAS 272


>01_01_0573 +
           4253484-4254653,4255526-4255735,4255842-4255937,
           4256034-4256255,4256829-4257023,4257097-4257243,
           4257323-4257472,4257762-4257892,4257978-4258194
          Length = 845

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 547 KIICRASEACLWIKMSFESEDSLSDFNEPGPPSS---QEGDFVGSLLPSLSMRPSISVLM 377
           K+I + SEA +W++   + +D+L     P   SS   ++ + V      + M+P  +   
Sbjct: 730 KVINQCSEAEVWLREKIQQQDALPKHANPVLLSSDLKKKAETVDRFCKPIMMKPKPAPKP 789

Query: 376 PSTPRSDAESSPEG 335
            + P++    +P G
Sbjct: 790 QTPPQTPPTETPAG 803


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,063,580
Number of Sequences: 37544
Number of extensions: 524184
Number of successful extensions: 1674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)