Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021257
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_52983| Best HMM Match : GntP_permease (HMM E-Value=1.2)             30   2.0  
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_57437| Best HMM Match : GalP_UDP_transf (HMM E-Value=5.7)           29   6.2  

>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +1

Query: 724 SQIFVFSTMMANKGAEAVLSGQHHSIIAYHCAQPATKKYL 843
           ++ ++FST +AN+ AEAV  G+  +II +H AQ +T  YL
Sbjct: 525 NRTYMFSTAIANRAAEAVSQGRVDNIITFHRAQQSTSPYL 564


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 285  KKEPEDTHRVKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGKSDPTKSPSCELGGPG 464
            + E        +E   + S ++S SDL  D + T +   ++SD  +  T   +C    P 
Sbjct: 1018 ENEDSSAREKNLEITRENSHKNSTSDLHSDNLSTIVIEAIESDKPNHHTSVDNCLKLLPN 1077

Query: 465  -SLKSERLSSDSNDILIHRQASEAR 536
             +  SE+   DSN  +I R    AR
Sbjct: 1078 ITSNSEKTCRDSNQGVIERHTCGAR 1102


>SB_52983| Best HMM Match : GntP_permease (HMM E-Value=1.2)
          Length = 683

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 474 ILTSQVHPVRRKVILLGHFYRRCP*GRRSL 385
           ILT+++ P+  K+ L+ H  RRC   RR+L
Sbjct: 443 ILTAKLDPLTGKIALMSHVQRRCVPERRAL 472


>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 652 PMSASEAQTLPSNVMSKQSGSMEQSQIFVFSTMMANKGAEAVLSGQHHSIIAYH 813
           P S   AQT P   ++K  GS++ + ++ F T     G +   SG +H +   H
Sbjct: 323 PDSPDSAQTTPKTPLAKDLGSLDPN-LYTFETQEEEDG-DVFFSGGNHKLGQVH 374


>SB_57437| Best HMM Match : GalP_UDP_transf (HMM E-Value=5.7)
          Length = 183

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 312 HDACLLVLSSAPPEWAATPRRTGTVARLSRVTGLVLE 202
           +D    +LS A   WA   + +GT+AR  R + L+ E
Sbjct: 121 YDGSFTLLSFAKRVWAWVTKESGTIARWERTSSLMQE 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,902,344
Number of Sequences: 59808
Number of extensions: 567824
Number of successful extensions: 1623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)