Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021257
         (844 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.71 
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           24   5.0  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   8.8  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 0.71
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +3

Query: 288 KEPEDTHRVKIEPHSQPSGEDSASDLGVDGIKTEIDGLMDSDGKSDPTKSPSCELGGPGS 467
           + P+    ++  P S     +  +D GVD    E D        + P KSPS ++ G  +
Sbjct: 550 RPPQQHSMLRTGPKSLAPDHEGDNDSGVDEYTQEKDRPNALASPASPLKSPS-KIPGL-A 607

Query: 468 LKSERLSSDSNDILIHRQASEAR 536
            + E +SS+S      +Q + A+
Sbjct: 608 RRPENISSESRSRSTSKQRANAK 630


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 438 PSCELGGPGSLKSERLSSD 494
           P  ++GGPG+++S+ L  D
Sbjct: 140 PGTQMGGPGTVESQDLFGD 158


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 428 WVTFTVAVHEAVDLCFNAV 372
           W    + +HE +  CFN V
Sbjct: 485 WYKKLITIHEQIAACFNTV 503


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,731
Number of Sequences: 2352
Number of extensions: 18331
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)