Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021257
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81040-2|CAB02782.2|  466|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 324  PHSQPSGEDSASDL--GVDGIKTEIDGLMDSDGKSDPTKSPSCELGGPGSLKSERLSSD 494
            P     GEDS S+   G  G K +  G    D K    K P+ E+ GPG+L   +  S+
Sbjct: 1028 PDITTDGEDSTSETSGGEQGPKGKSKGQPPGD-KGSEVKKPTSEVDGPGNLSGTKGKSN 1085


>AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical
           protein H43I07.3 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 537 QIIFRMETQTVVIQMAQITWVRVEWREVEGLWVW 638
           ++IF  E  TV ++   + W  +E  ++  +W W
Sbjct: 281 ELIFLCERWTVPVKEVSVRWTEIEGSKITPIWSW 314


>Z81040-2|CAB02782.2|  466|Caenorhabditis elegans Hypothetical
           protein C26E1.2 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 628 RPSTSRHSTRTHVIWAIWITTVWVSILK 545
           R   + H+    ++ AI++T+VW SILK
Sbjct: 167 RIGLANHAEADQLVLAIYVTSVWCSILK 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,951
Number of Sequences: 27780
Number of extensions: 413406
Number of successful extensions: 1185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)