Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021256
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FGN9 Cluster: Binding-protein-dependent transport sys...    36   0.75 
UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2; ...    36   0.99 
UniRef50_A0YWU0 Cluster: TPR repeat protein; n=1; Lyngbya sp. PC...    35   1.7  
UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein famil...    34   4.0  
UniRef50_Q8IKL0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  

>UniRef50_Q1FGN9 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Clostridium
           phytofermentans ISDg|Rep: Binding-protein-dependent
           transport systems inner membrane component - Clostridium
           phytofermentans ISDg
          Length = 197

 Score = 36.3 bits (80), Expect = 0.75
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 272 F*TQFPSQRKCTKQSFVSKSFLQPFFRVYTETQILVKFCANCVKVNFYNTNFFVV 108
           F T +P     T Q +++ +FL+  ++    + +L       + VNFYNTNF  V
Sbjct: 140 FSTNYPPNHSYTLQYYMNNNFLKLDYQSLATSAVLTSVLVFVIVVNFYNTNFNTV 194


>UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2;
           Clostridium difficile|Rep: Putative uncharacterized
           protein - Clostridium difficile (strain 630)
          Length = 491

 Score = 35.9 bits (79), Expect = 0.99
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 228 LCFEKFFTTFFSRLYGNTNFGQIL---RELRQS*LLQYKLFCSYRLYTPKSFYSSCINRK 58
           +CFE  F      LY N     +     +LR+   L +K+    ++Y+ KSFY   ++ K
Sbjct: 226 ICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSFYKKLLHEK 285

Query: 57  ISII 46
           IS I
Sbjct: 286 ISSI 289


>UniRef50_A0YWU0 Cluster: TPR repeat protein; n=1; Lyngbya sp. PCC
           8106|Rep: TPR repeat protein - Lyngbya sp. PCC 8106
          Length = 877

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = +3

Query: 321 QLVRKQTDHRTINKKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSEFVDLIYSCYSG 500
           Q  ++QTD    N +     +E    +  G I + +RE + +  ++ +EF++ +    SG
Sbjct: 365 QKAKQQTDEMLANFENYGGELEAQLSEAQGKIQERVREKYNTLKQLEAEFIEQVKQAQSG 424

Query: 501 SVSKKHQEIRIKSGLSVEFV 560
             ++K+Q+I+    L+ EFV
Sbjct: 425 VETQKNQQIQNFQQLTTEFV 444


>UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein family
           member, putative; n=1; Theileria annulata|Rep:
           SfiI-subtelomeric related protein family member,
           putative - Theileria annulata
          Length = 529

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 51  LKFYDLYN*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRI 188
           L F D  N + N+L+  V+ Y+ + ++E  F+  +  FD  LC+ +
Sbjct: 47  LLFTDSNNKDYNYLQCSVELYELILVIEFGFNCKKVWFDSKLCWTL 92


>UniRef50_Q8IKL0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 3322

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 72  N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFS 248
           N N N      +NY+K    ++N +  +++ +QN   R++  K   K F NK +F   S
Sbjct: 427 NNNNNNKNNSNNNYEKYYNYKLNNNLFKSDVNQNYSSRLNINKNFPKNFNNKKIFTNMS 485


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,593,590
Number of Sequences: 1657284
Number of extensions: 12849391
Number of successful extensions: 33631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33623
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)