Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021256
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   6.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   6.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   8.1  

>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 608 DFGDLFLKVSPELLCLLQMKSNQQSNST 691
           DF D  L  SP+    L+ +S+Q S+ST
Sbjct: 86  DFNDALLVASPDTSVALRYRSSQLSSST 113


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 280 NSNFEHNFLRSENVQNSPLFRKVFY 206
           N  FEHN  + E +Q   +F  +FY
Sbjct: 259 NLEFEHNSRKLEKLQKMNVFSDIFY 283


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 RRKLCSKLLFWLKSGGATKSPL 317
           +RKL ++L  W+K G +T++ L
Sbjct: 577 KRKLFTRLYIWMKDGDSTETSL 598


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 566 YMMSTAIMHQSALHDFGDLFLKVSPELLCLLQMKSNQQSNSTSADDE 706
           YM +  +     +H + D +L+V+P +  +LQ+  +  + ++  DDE
Sbjct: 77  YMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDE 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,795
Number of Sequences: 5004
Number of extensions: 61588
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)