Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021256
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0794 + 21562995-21563004,21564151-21565799                       29   4.8  
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339...    28   6.4  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    28   8.5  
03_03_0241 - 15757331-15757423,15757536-15757643,15758487-157587...    28   8.5  

>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 408 GNIFKSLRELFIS*PKIHSEFVDLIYSCYSGSVSKKHQEIRIKSGLSVEFVL 563
           G + KS+ E F    KI  EF  L  S Y+  V+K+  EIR    LSV F L
Sbjct: 342 GKMLKSMSEEF----KIPLEFTPL--SVYATQVTKEMLEIRPGEALSVNFTL 387


>04_03_0870 +
           20431215-20431419,20432559-20433439,20433829-20433990,
           20434742-20435001,20435110-20435200,20435487-20435675
          Length = 595

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 310 DFVAPPDLSQNSNFEHNFLRSENVQNSPLFRKVFYNLFFASIRKHKFWSN 161
           D V P  +       ++F   +N  N+P++ K +Y+LF+    K   W N
Sbjct: 43  DGVPPSIVDSELRTGYHFQPPKNWINAPMYYKGWYHLFYQYNPKGAVWGN 92


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 482 IFVLQWISFKETSRNKNKIWIKCRVRFAYMMSTAIMHQSALHDFGDLFLKVS 637
           I VL W S    SRN+   W +  +     +S   +  +A H    + ++VS
Sbjct: 422 IGVLTWRSLVIMSRNRKYFWSRFALYMLLALSVGTIFNNAGHSLSSVMVRVS 473


>03_03_0241 -
           15757331-15757423,15757536-15757643,15758487-15758710,
           15759543-15760110
          Length = 330

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 322 WPRGDFVAPPDLSQNSNFEHNFLRSENVQNSPLFRKVFYNLFFA 191
           W  G  +A P+ S   +    +L      N+P F   +YN++FA
Sbjct: 210 WFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFA 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,350,044
Number of Sequences: 37544
Number of extensions: 325982
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)