Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021256
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               31   0.93 
SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)                     28   6.5  
SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = +3

Query: 72   N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFSL 251
            N  +N  + +VD Y++ C  +        + + N+C  +D +KR  K   N+  +   ++
Sbjct: 1398 NTKENNEDRRVDEYRRKCKSKPGTTKENLDVNANICKNLDKRKRSYKEAMNESAYLEGNV 1457

Query: 252  RRKLCSK 272
            + +L S+
Sbjct: 1458 KERLSSE 1464


>SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)
          Length = 483

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 268 EHNFLRSENVQNSPLFRKVFYN 203
           EHN LR+ +  N PL  KVFY+
Sbjct: 440 EHNPLRNPSPLNEPLHNKVFYS 461


>SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 299 GNKIASWPTSSETN*SPNDKQKSNDLS 379
           GN++A W T + TN S N+   SN+ S
Sbjct: 5   GNEVAFWGTQNSTNNSNNNDNSSNNNS 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,255,543
Number of Sequences: 59808
Number of extensions: 429626
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)