Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021255
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0376 + 22896481-22896972 31 1.00
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 31 1.00
06_02_0126 + 12130409-12130532,12131015-12131373 29 3.0
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 3.0
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 4.0
01_06_0570 - 30317848-30318240 29 4.0
09_06_0240 + 21797458-21799369,21799636-21799784 28 7.0
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 9.3
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075... 28 9.3
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688... 28 9.3
>11_06_0376 + 22896481-22896972
Length = 163
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 549 SKQISIPKEHYRWILGKQGQKLKELEKVTATK 644
SKQ+ +P+EH WIL ++ E +K A +
Sbjct: 8 SKQLRMPQEHISWILHRREPSFDEADKAAARR 39
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 545 LLLKMGQNLSPRSRTALCFPVIRKVRLPSLLVDISMCAPV----SLVMEWQVLKDSPSPK 378
+LL +GQN+SP + LC P R + L S L I + P S + W +PK
Sbjct: 143 ILLALGQNISPEFQ-PLCNPFRRAISLWSPLAAILLLTPTMQHHSRELVWNTTGGRLTPK 201
Query: 377 VLALSSF 357
+ A +F
Sbjct: 202 ITAEINF 208
>06_02_0126 + 12130409-12130532,12131015-12131373
Length = 160
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 247 IAASQPLVQRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEG 390
+AA++ L + N Q + G ++ +V HVP +E+ + + +G G
Sbjct: 23 VAAARELTEANGLQLLSDSSKGKNMEPEVVHVPQDEKIAYHGDGYGHG 70
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 440 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 339
M PVS + + L+D+ SP + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 555 QISIPKEHYRWILGKQGQKLKELEKVTATKINVPG 659
++ +P +H +LGK G + E+ K+T I + G
Sbjct: 331 RLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFG 365
>01_06_0570 - 30317848-30318240
Length = 130
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 507 RARRQILTHFQQQASKQISIPKEHYRWILGKQG 605
R ++QI H +S+ + IP+ RW G QG
Sbjct: 41 RGQQQITRHCSTASSRPVDIPRAAQRWSGGDQG 73
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +3
Query: 480 YHWKAERCSRARRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKIN 650
+HW SRAR+++L + KE Y W + + + E+ K N
Sbjct: 417 FHWGNVHMSRARKRLLLPGDSPQESVLEQVKEAYEWAKEEYNKAGRRYEEAVKAKPN 473
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 404 VLKDSPSPKVLALSSFRSSYGTWK 333
+ KD P P V SSF + +G W+
Sbjct: 645 IQKDVPYPAVFVTSSFNTRFGVWE 668
>03_06_0654 -
35307122-35307205,35307381-35307444,35307486-35307536,
35307881-35307993,35308083-35308164,35308621-35308741,
35308821-35308980,35309335-35309396,35309548-35309707,
35309794-35310021
Length = 374
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +1
Query: 271 QRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGA 435
+R IQ T L VGSS+ +V V EERKL F E ++ HS GA
Sbjct: 132 KRPIQDVTKDL-VGSSISVKVVEVNEEERKL----VFSEKDASWFTHSSLVKIGA 181
>01_06_0365 +
28767538-28767696,28768299-28768520,28768630-28768868,
28769499-28770024,28770115-28770388,28770495-28771134,
28771220-28771448,28771682-28771948,28772031-28772294,
28772700-28773344
Length = 1154
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 424 DTGAHIEISTSKDGSLTFLITGKQSAVLERGD-KF*PIFSNRPVNKSQSL-RSIIVGS*E 597
D G+H E+ DG+ + LI +Q+ E D ++ + ++R ++S SL +S+I S
Sbjct: 472 DQGSHDELIKDPDGAYSQLIQLQQTHTEEMHDVQYSEVSTSRLKSRSLSLEQSMINDSPR 531
Query: 598 NRDRN 612
NR +N
Sbjct: 532 NRRKN 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,511,726
Number of Sequences: 37544
Number of extensions: 409853
Number of successful extensions: 1052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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