Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021255
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    50   2e-06
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        31   0.89 
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    31   0.89 
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    31   0.89 
U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    29   3.6  
U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +3

Query: 498 RCSRARRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVP 656
           +   AR +I+   Q QAS++I IPK+H+  ++GK+G  L+ LE  T  +I +P
Sbjct: 120 KAEEARARIIRDLQTQASREIDIPKDHHGRLIGKEGALLRNLEAETNCRIQIP 172



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 334 FHVPYEERKLDNANTFGE-GESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLE 510
           F +  +ER  +   +FG   E  +   +I   T   IE+S SKDG LT ++ G+++   E
Sbjct: 65  FRLASDERS-NKVKSFGSTSEESKKAQAIATATKTRIELSESKDGELTVVVKGERAKAEE 123



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 540  QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVP 656
            +Q S  I++P ++++ I+G++G  +  L++     INVP
Sbjct: 1005 KQWSMSINVPTDYHQKIIGQRGATITALKEKYGVIINVP 1043


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 483 HWKAERCSRARRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGI 662
           H   E      ++ L   + + + +   P   YR I+G+ G+ LK +EKVT T I     
Sbjct: 678 HMARETMQSKTKRFLDEEKFKETVEHCTPISFYRKIIGRCGENLKTIEKVTRTAIVFKRS 737

Query: 663 SDNS 674
            DN+
Sbjct: 738 FDNN 741


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 555 QISIPKEHYRWILGKQGQKLKELEKVTATKINVP 656
           ++S+P      I+GK GQ ++EL+++T   + +P
Sbjct: 561 EVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIP 594


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 555 QISIPKEHYRWILGKQGQKLKELEKVTATKINVP 656
           ++S+P      I+GK GQ ++EL+++T   + +P
Sbjct: 685 EVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIP 718


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 540 QQASKQISIP-KEHYRWILGKQGQKLKELEKVTATKINVP 656
           Q  ++ + +P  EH   I+G+QG K+K L   T T I  P
Sbjct: 45  QNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 84


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 540 QQASKQISIP-KEHYRWILGKQGQKLKELEKVTATKINVP 656
           Q  ++ + +P  EH   I+G+QG K+K L   T T I  P
Sbjct: 45  QNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 84


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 540 QQASKQISIP-KEHYRWILGKQGQKLKELEKVTATKINVP 656
           Q  ++ + +P  EH   I+G+QG K+K L   T T I  P
Sbjct: 76  QNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 115


>U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK418.9b protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 537 QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV-PGISDNS 674
           + QA  ++ +P+     I+GK G+ +K L   T TKI   P  + NS
Sbjct: 190 EAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNS 236


>U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical
           protein ZK418.9a protein.
          Length = 557

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 537 QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV-PGISDNS 674
           + QA  ++ +P+     I+GK G+ +K L   T TKI   P  + NS
Sbjct: 237 EAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNS 283


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 546 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 674
           A  ++ +P+     I+GKQG  +K L   T TKI      D S
Sbjct: 186 ARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 228


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 546 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 674
           A  ++ +P+     I+GKQG  +K L   T TKI      D S
Sbjct: 249 ARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 291


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 546 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 674
           A  ++ +P+     I+GKQG  +K L   T TKI      D S
Sbjct: 227 ARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 269


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 468 TAIFAGRYFDVRSCILSYG--MASS*GFSLTKSISIVKF 358
           T  F G+Y D+ S ++SYG     + GF +T+   IV+F
Sbjct: 198 TKFFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQF 236


>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 549 SKQISIPKEHYRWILGKQGQKLKELEKVTATKI 647
           S Q+ +P+     I+G QG  +K++   T TKI
Sbjct: 332 SLQVKVPRSTVGAIMGLQGSNIKKISNETETKI 364


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 549 SKQISIPKEHYRWILGKQGQKLKELEKVTATKI 647
           S Q+ +P+     I+G QG+ +K+L   T TKI
Sbjct: 247 SLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKI 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,971
Number of Sequences: 27780
Number of extensions: 359275
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)