Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021255
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    31   0.63 
At1g69090.1 68414.m07906 F-box family protein contains F-box dom...    30   1.5  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    30   1.9  
At1g06250.1 68414.m00661 lipase class 3 family protein similar t...    29   2.5  
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    29   3.4  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    29   4.4  
At2g41760.1 68415.m05162 expressed protein                             28   5.9  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    28   5.9  
At4g03090.1 68417.m00417 expressed protein                             28   7.7  
At1g29720.1 68414.m03633 protein kinase family protein contains ...    28   7.7  

>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 450 YQQRWQSNFP-YHWKAERCSRARRQILTHFQQQASKQISIPKEHYRWILGKQGQKL 614
           Y   W SN P +     + SR  R++    ++  S+ + + K++ + +LG+QGQ +
Sbjct: 137 YVNEWPSNPPSFKEIVSKYSREVREVGFKIEELISESLGLEKDYMKKVLGEQGQHM 192


>At1g69090.1 68414.m07906 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 401

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 128 SMMVGDVIPVHPDVPMHVEEMNNVGYENNVSFAYDDLFPALPLPSPLCNVIYNRLQT-NF 304
           ++ + D     P     +     VGY  N  + YD+ FP +PL   L   IYN + T   
Sbjct: 229 NLYIYDFFGEFPREAFRISVREFVGYATN-PYGYDE-FPEVPLKLKLNRYIYNMIVTVRG 286

Query: 305 ELALHCTLKFSM 340
           ++ +  +L FSM
Sbjct: 287 DVLIVASLHFSM 298


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 143 DVIPVHPDVPMHVEEMNNVGYENNVSFAYDDLFPALPLPSPLCNVIYNRLQTNFELALHC 322
           D +P   D      ++  V Y +  S +Y +        SPL  + Y+     F L L C
Sbjct: 147 DAVPNDDDNGGGGGDIYAVAYNDGASLSYGNHLKCKCCASPLEKLYYHCSTCKFNLNLTC 206

Query: 323 TLK---FSMCHMKNENLTMLILLVR 388
           +++    ++ H+K    T+ + LVR
Sbjct: 207 SMRPPPTTISHLKFHEHTLTLFLVR 231


>At1g06250.1 68414.m00661 lipase class 3 family protein similar to
           lipase GB:AAD01804 GI:4103627 from [Dianthus
           caryophyllus]; contains Pfam profile PF01764: Lipase
          Length = 423

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 89  QGLPEETKMMHQQSMMVGDVIPVHPDVP---MHVEEMNNVGYE 208
           +G+P+  K++  Q+   G + P+ PD+    +H  EM+ VGY+
Sbjct: 3   EGIPKRWKVLSGQNKWKGLLDPLDPDLRRYIIHYGEMSQVGYD 45


>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 611

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 293 VACCILRCTRG-WEAAMLEIGHRRQMTHCSHIQ 198
           +ACC+  C  G W  AMLE+G  +++ +C  ++
Sbjct: 452 LACCL--CNNGRWCDAMLEVGRMKRLENCRPLE 482


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 482 IRKVRLPSLLVDISMCAPVSLVMEWQVLKDSPSPKVLALSSFRSSY 345
           +R+++  S+  +  MC P + V EWQ +  SP  KVL   + +  +
Sbjct: 457 VREIKFRSIC-NSPMCPPDTAVTEWQHVVLSPDKKVLVFETVQQPH 501


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 337 HVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSK 459
           H+   E++L +A+        RT HS T+D   H + S+ +
Sbjct: 819 HIQETEKRLSSASDLKASAGCRTVHSETQDEDVHEDFSSEE 859


>At2g41760.1 68415.m05162 expressed protein
          Length = 221

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 233 DLFPALPLPSPLCNVIYNRLQTNFELALHCTLKFSMCH 346
           DL   LP PSPL + +   +Q +F+L       F + H
Sbjct: 97  DLDSTLPFPSPLASYVTETIQPSFQLFAEYQRFFRIVH 134


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 175 HGYIRMNGYHISNHHGLLMHHF 110
           H  ++ NG  +S HH +L HHF
Sbjct: 28  HHQLQENGSLVSGHHQVLSHHF 49


>At4g03090.1 68417.m00417 expressed protein 
          Length = 877

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 250 AASQPLVQRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSI 417
           A+S   V  + QQA   L+    LH+   H P+ ER   N    G+G  LR   SI
Sbjct: 207 ASSVEEVNFHCQQAEAALQF---LHSLCQHKPFRERVAKNKELCGKGGVLRLAQSI 259


>At1g29720.1 68414.m03633 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 300

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 14  DPGVYGVIFQFDLIQYFCTVTTRRGQGLPEETKMMHQQSMMVGDVIPVHPD 166
           DPG+YG  +    ++   T ++    G+ ++T    + S+   D+ P++P+
Sbjct: 235 DPGIYGHDWSISKLRDIDTHSSSSTSGVTDQTTTTMKSSVSGCDLYPLYPE 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,880
Number of Sequences: 28952
Number of extensions: 330201
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)