Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021254
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    51   2e-07
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   5.1  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +2

Query: 539 SVIREIVESGVQEDP-----FYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXX 703
           + I EI  + V+ +P     F+V DL  V  +  +W   LPRV+PFYAVKC         
Sbjct: 49  NTIEEIERAAVRGEPADSDAFFVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKVLAL 108

Query: 704 XXXXXXXFDCASK 742
                  FDCASK
Sbjct: 109 LNKFGTGFDCASK 121


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 730 IEASAQSRQVGQQQLVIIALHSVKRFNPGQELLPLLVAG 614
           +EA A+ ++VG+   ++    S +RF+ G +L P +  G
Sbjct: 385 LEAEARFKEVGEAYTILSDPESRRRFDSGVDLEPGMEGG 423


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 605 EVVARYQQWK--ELLPRVEPF 661
           EVVA Y +WK  ELLP   P+
Sbjct: 269 EVVASYAKWKESELLPEATPY 289


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 761  VTSSISL*KRNRSQCPEPPGWSTATCHHCTSQRKTVQPWAGAPSTA 624
            V+S +      R Q P+PP  STA        R  +   AG  STA
Sbjct: 1057 VSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTA 1102


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 378 SGLAVSSVVGAWSWGPTSAS 319
           SGL  SS V AW+W  T  S
Sbjct: 54  SGLISSSTVSAWTWPATLLS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,920
Number of Sequences: 5004
Number of extensions: 47776
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)