Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021254
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0200 + 2400929-2402161 56 3e-08
09_06_0142 - 21107878-21109104 51 9e-07
02_03_0240 - 16739628-16740369,16740392-16740978 42 5e-04
03_06_0244 + 32613914-32614666 32 0.43
09_02_0543 + 10427321-10428315,10428440-10429154 29 3.1
10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942 29 4.0
04_03_0565 + 17207582-17207811,17208026-17208320 29 5.3
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 28 9.3
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 9.3
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 28 9.3
>04_01_0200 + 2400929-2402161
Length = 410
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/67 (40%), Positives = 34/67 (50%)
Frame = +2
Query: 542 VIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXXXXXXXX 721
+I +IV S F+V+DL +VV Y W+ LP V PFYAVKC
Sbjct: 38 LIHDIVASSSARSAFHVLDLAKVVDLYAGWRRALPGVRPFYAVKCNPDTALLGALAALGA 97
Query: 722 XFDCASK 742
FDCAS+
Sbjct: 98 GFDCASR 104
>09_06_0142 - 21107878-21109104
Length = 408
Score = 51.2 bits (117), Expect = 9e-07
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +2
Query: 539 SVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXXXXXXX 718
++IR+IV G + F+V DL +VV ++ W+ LP V P YAVKC
Sbjct: 32 ALIRDIVAGGARS-AFHVFDLAKVVDLHRGWRRALPDVRPCYAVKCNPDGAMLAALAALG 90
Query: 719 XXFDCASK 742
FDCAS+
Sbjct: 91 AGFDCASR 98
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +2
Query: 584 FYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXXXXXXXXXFDCASK 742
F V+DLGEV + W L V P+YAVKC FDCAS+
Sbjct: 63 FNVIDLGEVARLFAAWWRGLRGVRPYYAVKCNPNPALLGALAGLGAGFDCASR 115
>03_06_0244 + 32613914-32614666
Length = 250
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 532 PGQRDPGDRGERGAGGPLLRDGPRRSCRPLPAVEGAP 642
PG G R ER +GGP++R RR C +V G+P
Sbjct: 30 PGGELVGARWERTSGGPVMRRRCRRRCGRRESVTGSP 66
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 272 PGPADATSPHSPDTCGLALVGPQDQAP 352
PGPA A SPHSP V P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942
Length = 582
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 393 QGNGTVDRGAGPRRARDKLRKQVFVKLDNTMKVVEEQRIE*WRD 524
+G G V RGA ++A D + ++ KL+ +K + E I+ W D
Sbjct: 84 EGGGEVARGAPLKQAMDSMESKLLEKLEGIIKWMHE--IDQWLD 125
>04_03_0565 + 17207582-17207811,17208026-17208320
Length = 174
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 558 WRAGCRRTPST*WTSAKLSPATSSGRSSCPGLNR 659
WR CRR W + GRSSC ++R
Sbjct: 103 WRRQCRRPVQLHWWGVTWRDGVAGGRSSCATVSR 136
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 405 CRFLVTFQLSGLAVSSVVGAWSWGPTSA 322
C LV F++ G ++ + AW WG SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 454 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 344
F+ L RR PAPR +T+P C VS+V S CR L
Sbjct: 42 FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 661 KRFNPGQELLPLLVAGDNFAEVHH 590
K PG+ELLP +GDN AE H
Sbjct: 605 KGIQPGEELLPEGASGDNKAEPVH 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,026,567
Number of Sequences: 37544
Number of extensions: 440494
Number of successful extensions: 1587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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