Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021254
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               64   1e-10
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    32   0.44 
SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
 Frame = +2

Query: 512 VMEGSWSPVSVIREIVES-GVQE--DPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCXX 682
           +++   S   VI E ++S G +E  D FY++DL +VV ++++W +LLPRVEPFYA+KC  
Sbjct: 189 IVKDGLSHRDVITEKIDSLGREEKDDAFYIVDLADVVLKHKKWVQLLPRVEPFYAMKCNN 248

Query: 683 XXXXXXXXXXXXXXFDCASK 742
                         FDCASK
Sbjct: 249 DPAVLKLLAGLGLGFDCASK 268


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 544 DPGDRGERGAGGPLLRDGPRRSCRPLPAVEGAP 642
           DPGD GE G  GP  R+G   +  P P V G P
Sbjct: 155 DPGDVGEPGEAGPSGRNGANGTAGP-PGVRGQP 186


>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 466 TKTCFLSLSRARRGPAPRSTVPFP 395
           TK CFL+L   RR P  R  +P+P
Sbjct: 174 TKICFLNLELTRRNPTRRKFLPYP 197


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 737 KRNRSQCPEPPGWSTATCH 681
           K NR +C  PPGW+   CH
Sbjct: 650 KVNRKECICPPGWTGDRCH 668


>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 427 PAEPGIN*GNKSS*SWI--TP*RLWRNNA*SDGGIVVPGQRDPGDRGERGAGGPLLRDGP 600
           P EPG N G   S  W   T  R         G   VPGQ  PG  G  G  GP  RD  
Sbjct: 175 PGEPGRN-GTHGSPGWRGKTGPRGPMGPIGPPGTPGVPGQ--PGKAGSPGERGPPGRDRV 231

Query: 601 RRSCR 615
            R+CR
Sbjct: 232 ARNCR 236


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 594 WTSAKLSPATSSGRSSCPGLNRFTL 668
           W  AK    T SG SSCPG N+F L
Sbjct: 670 WIQAKNRSVTPSG-SSCPGGNKFCL 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,933,621
Number of Sequences: 59808
Number of extensions: 448643
Number of successful extensions: 1227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)