Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021254
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine decar...    54   8e-08
U97191-6|AAM15576.1|  263|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U97191-5|AAB52428.1|  477|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    32   0.51 
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    29   4.8  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    28   6.3  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    28   6.3  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        28   6.3  
AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    28   6.3  

>U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical
           protein K11C4.4 protein.
          Length = 422

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = +2

Query: 575 EDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXXXXXXXXXFDCASK 742
           +  F ++DL +++ R+Q WK  LP +EPFYAVKC                FDCASK
Sbjct: 39  DSSFMLVDLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDCASK 94


>U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine
           decarboxylase protein.
          Length = 422

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = +2

Query: 575 EDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCXXXXXXXXXXXXXXXXFDCASK 742
           +  F ++DL +++ R+Q WK  LP +EPFYAVKC                FDCASK
Sbjct: 39  DSSFMLVDLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDCASK 94


>U97191-6|AAM15576.1|  263|Caenorhabditis elegans Hypothetical
           protein F53F10.2b protein.
          Length = 263

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 512 VMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKC 676
           V+ G++ +P+ + R +        PF+VMD+  +  R +  + +LPRV P YAV C
Sbjct: 32  VLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRVRPNYAVAC 87


>U97191-5|AAB52428.1|  477|Caenorhabditis elegans Hypothetical
           protein F53F10.2a protein.
          Length = 477

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 512 VMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKC 676
           V+ G++ +P+ + R +        PF+VMD+  +  R +  + +LPRV P YAV C
Sbjct: 32  VLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRVRPNYAVAC 87


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 39/108 (36%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
 Frame = +1

Query: 331 GPP-RPGSDDT*HR*PGQLKRYKETAQSTEAPAPAEPGIN*GNKSS*SWITP*RLWRNNA 507
           GPP RPGSD      PG+       A     P P  P    GN        P +   N+A
Sbjct: 161 GPPGRPGSDGQ----PGRPATGGGAAPRPGPPGPKGPRGAPGNSGRAG--APGQPG-NDA 213

Query: 508 *SDGGIVVPGQRDPGDRGERGAGGPLLRDGPRRSCRPLPA-VEGAPAQ 648
              GG    G   PG  G RGA GP    G     RP PA  +GAP Q
Sbjct: 214 HGYGG----GVGAPGPAGPRGAPGPAGHPGSSGGGRPGPAGPKGAPGQ 257


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 535 GQRDPGDRGERGAGGPLLRDGPRRSCRPLPAVEGAP 642
           GQ +PG  GE G  G     GP+ SC   P    AP
Sbjct: 246 GQGEPGKDGEDGENGAAGAAGPKGSCDHCPPPRTAP 281


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 535 GQRDPGDRGERGAGGPLLRDGPRRSCRPLPAVEGAP 642
           GQ +PG  GE G  G     GP+ SC   P    AP
Sbjct: 246 GQGEPGKDGEDGENGAAGAAGPKGSCDHCPPPRTAP 281


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 405 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVAS 283
           C F+++  L    + SV+G W +G T      V G  G +AS
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIAS 154


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +3

Query: 426 PRRARDKLRKQVFVKLDNTMKVVEEQRIE 512
           P R RD+++++V ++ +   ++ EE+R+E
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERLE 434


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 115 DNKSFKNYSIKGSTG*VRRVWQCRAERT 198
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 10  DNEHYENYDVEATTG-MNMMEECQSERT 36


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 115 DNKSFKNYSIKGSTG*VRRVWQCRAERT 198
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 115 DNKSFKNYSIKGSTG*VRRVWQCRAERT 198
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306


>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 582 GSSCTPLSTISRITLTGDHDPSITLCVVPPQPSWCYPTLRRL 457
           G    PL+TI  +T+ G+  P +   VVPP      PTLR L
Sbjct: 98  GDFVDPLATIWNMTIPGNQPPFVPKQVVPPG----NPTLRAL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,941
Number of Sequences: 27780
Number of extensions: 334574
Number of successful extensions: 1327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)