Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021253X
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 1.2
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 1.6
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 2.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 3.8
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 3.8
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 24 6.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 24 6.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 24 6.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 8.7
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 23 8.7
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 23 8.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 23 8.7
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 1.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 79 SDILCITLYKIKNNGTL 129
S+ILC LY +K +GTL
Sbjct: 618 SEILCFQLYDLKRDGTL 634
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.8 bits (54), Expect = 1.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 194 KVFPREKGLQTHSFSIFFTRLGNVPLFFIL 105
+++P EK +Q H F R+ +P F++
Sbjct: 997 QLYPEEKIVQVHHFHKDIARIHGIPFSFVI 1026
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 58 LQS*QNVSDILCITLYKIKNNGTLPSLVKNIE 153
+QS Q SD+ +KIK+ G L ++V N+E
Sbjct: 697 VQSHQGTSDVE--NTFKIKDKGVLRNVVSNLE 726
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 3.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +3
Query: 198 GMEEPKWKKNCAVNSSSYFC 257
G+++PKWK+ + + + FC
Sbjct: 1140 GVDQPKWKELTSFDEADKFC 1159
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 70 QNVSDILCITLYKIKNNGTLPSLVKNIEKE 159
+N+S+I C Y N G L ++ +E +
Sbjct: 357 KNISNINCKEAYSTNNEGELDDILTTLESD 386
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 204 EEPKWKKNCAVNSSSYFCPWWPFRQL 281
+ P + N + NS +YFCP+ F +
Sbjct: 254 DHPHFYLNDSRNSLNYFCPFSAFEDI 279
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 180 PRKNLRGMEEPKWKKNCAVNSSSYFCPW 263
P +NL+ +E ++KK+ + F PW
Sbjct: 29 PLRNLQWVESYQYKKHTITSLDLEFLPW 56
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 23.8 bits (49), Expect = 6.6
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 207 PPSPEGFSEGKRASNSFLFYIFYK 136
PP+PEG S + + ++ F++
Sbjct: 241 PPNPEGMSSTSSSCKTIVYQFFFR 264
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 134 LGNVPLFFILYKVIHNISETFCYDCKL 54
L N L F LYK++ S F C L
Sbjct: 1703 LNNPHLLFTLYKLLERFSLIFLRKCAL 1729
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 23.4 bits (48), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 210 VPPSPEGFSEGKR 172
+PP PEG +GK+
Sbjct: 295 IPPQPEGSKDGKK 307
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 23.4 bits (48), Expect = 8.7
Identities = 6/31 (19%), Positives = 16/31 (51%)
Frame = +3
Query: 159 MSLKPFFPRKNLRGMEEPKWKKNCAVNSSSY 251
++++P FP+ ++ WKK + ++
Sbjct: 105 IAMRPIFPQHRYTEQDKKNWKKKVIIEDLNF 135
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 82 DILCITLYKIKNNGTLPSLVKNIEKE 159
D+L + K+K + P L+KNIE+E
Sbjct: 256 DLLSVDELKLKYSN--PDLIKNIERE 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,811
Number of Sequences: 5004
Number of extensions: 21319
Number of successful extensions: 71
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -