Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021253X
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    28   1.4  
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    27   4.3  
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     26   5.7  
01_01_0363 + 2850954-2853675,2853819-2854225                           26   5.7  
03_05_0424 + 24107009-24107138,24107381-24107784                       26   7.6  

>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 206 LHPPKVFPREKGLQTHSFSIFFTRLGNVPLFFILYKVIHNISETFCY 66
           L PPK+F ++     +S    F  L N  L      VI  +S +FCY
Sbjct: 307 LSPPKLFEKDSYSLPYSEHACFAELENFMLIVRPSTVIGIVSTSFCY 353


>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 FFPRKNLRGMEEPKWKKNCAVNSSSYFC 257
           + P+ ++RG     W+   A+NSS YFC
Sbjct: 167 YLPKTSMRG-----WRSGDAMNSSPYFC 189


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 135 PCKKYRKGMSLKP-FFPRK 188
           PCKK +KGM++ P FF  K
Sbjct: 666 PCKKQKKGMNILPKFFTSK 684


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 76  VSDILCITLYKIKNNGTLPSLVKNI 150
           ++D+  ITLY  + +G +PS++ N+
Sbjct: 404 LADLAIITLYSTRLSGLIPSVIGNL 428


>03_05_0424 + 24107009-24107138,24107381-24107784
          Length = 177

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -3

Query: 275 PKRPPRAEVARAVNSTIFLPLGFLHPPKVFPR-EKGLQ 165
           P RPP    A   +     PLG LH  +     EKGLQ
Sbjct: 130 PSRPPETTTATPSSRPASSPLGLLHRERERGEGEKGLQ 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,898,455
Number of Sequences: 37544
Number of extensions: 142868
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)