Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021253X
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      29   0.64 
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 29   0.84 
SB_22864| Best HMM Match : Adeno_VII (HMM E-Value=7.5)                 27   4.5  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             27   4.5  
SB_26665| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   26   7.9  

>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 167 EALFPSEKPSGDGGTQVEEKXXXXXXXXXXXXVAFSAALVTLP--PPASLKLTA 322
           E+  P EKPSG   T  +EK            V  S A+VTLP  PP   K  A
Sbjct: 53  ESTKPEEKPSGGNHTS-QEKGKISSLTSEGARVTTSTAVVTLPVLPPLITKYAA 105


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 321 AVNFKEAGGGKVTKAAEKATKGR 253
           +V+  EA GGK TKAA K  KG+
Sbjct: 299 SVDKTEAAGGKTTKAATKVIKGK 321


>SB_22864| Best HMM Match : Adeno_VII (HMM E-Value=7.5)
          Length = 169

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 172 PFSLGKTFGGWRNPSGR 222
           PFSLGKT+G + + +GR
Sbjct: 16  PFSLGKTYGVYMSDNGR 32


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 39 YEFTL*FAVITKCFRYI 89
          Y + + FA+IT+CFRY+
Sbjct: 34 YVYPVFFAMITRCFRYV 50


>SB_26665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 281 KLPKRPPRAEVARAVNSTIFLPLGFLHPPKVFPREKGLQTHSFSIFFTRLGNVPLFFI 108
           KL K   R  ++R +   + +   F H    F   +     +F + F++LGN P+ FI
Sbjct: 36  KLSKPTSRLFLSRHITDVLVVLFAFFHVGLPFALPE-----AFRVVFSKLGNFPVTFI 88


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 182 REKGLQTHSFSIFFTRLGNVPLFFILYKVIHNISETFCY 66
           +E+ L+  +F + +T LGN  +  I   ++  +SE  C+
Sbjct: 161 QERVLENFTFPVTYTSLGNTSVLLIAGNILGYVSE-LCF 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,514,001
Number of Sequences: 59808
Number of extensions: 146486
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)